Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015782.1 Corchorus olitorius cultivar O-4 contig15815, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68884

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--799
154
5.1
154
88
1
1159
41
18
18
21
1.91
5548--5864
157
2.0
157
86
7
443
34
6
11
47
1.65
13063--13138
39
1.9
39
97
0
143
30
14
28
26
1.95
14888--14920
6
5.5
6
100
0
66
51
0
0
48
1.00
17242--17281
21
1.9
21
84
0
53
30
5
30
35
1.79
19669--19736
32
2.1
33
89
5
104
47
11
26
14
1.79
21001--21025
11
2.3
11
100
0
50
8
8
0
84
0.79
20995--21031
19
1.9
19
88
0
56
16
5
0
78
0.93
36118--36309
66
2.9
66
88
0
267
23
23
15
38
1.92
36366--36633
66
4.0
66
86
1
401
22
25
16
36
1.93
37458--37558
35
2.9
35
87
0
148
30
23
13
31
1.94
38384--38437
26
2.1
26
93
6
92
29
18
11
40
1.85
39502--39562
27
2.2
28
86
11
83
42
6
4
45
1.51
40334--40374
20
2.0
20
85
0
55
14
29
29
26
1.95
40448--40504
18
3.1
19
80
7
55
45
0
1
52
1.11
40520--40573
25
2.2
25
90
6
83
50
0
0
50
1.00
40472--40605
69
2.0
65
87
8
191
54
2
0
42
1.18
42791--42869
22
3.6
22
79
1
97
36
10
11
41
1.75
42769--42869
43
2.3
44
83
8
118
36
8
12
41
1.75
55596--56034
196
2.3
196
93
2
751
35
14
15
34
1.88
60052--60107
26
2.2
26
83
0
67
17
32
5
44
1.72
60272--60302
16
1.9
16
93
0
53
29
6
32
32
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66936--66978
21
2.0
21
86
9
59
44
0
2
53
1.13

Tables:   1

The End!