Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015783.1 Corchorus olitorius cultivar O-4 contig15816, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52813

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
469--546
29
2.7
29
79
2
93
16
16
16
50
1.79
2253--2277
13
1.9
13
100
0
50
48
4
8
40
1.51
12239--12288
22
2.3
22
100
0
100
44
16
34
6
1.72
15895--15946
6
8.2
6
83
12
52
71
15
13
0
1.15
15895--15936
7
6.6
7
86
13
56
73
14
11
0
1.09
15895--15944
14
3.8
13
80
15
59
72
16
12
0
1.13
22626--22654
6
4.8
6
100
0
58
17
51
31
0
1.45
37646--37691
20
2.3
20
80
0
56
36
8
17
36
1.81
37742--37919
51
3.2
51
65
23
131
33
13
11
42
1.80
37713--38087
120
3.1
120
97
1
691
34
12
10
41
1.78
39933--40072
72
2.0
72
88
8
216
42
10
18
27
1.83
40377--40615
121
2.0
121
96
0
442
38
20
12
27
1.89
41163--41203
2
20.5
2
89
0
64
43
0
2
53
1.13
44596--44657
9
6.4
9
72
20
54
79
3
17
0
0.87
44596--44657
17
3.8
17
73
14
67
79
3
17
0
0.87
49586--50139
54
10.2
55
87
2
651
27
16
20
34
1.95

Tables:   1

The End!