Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015786.1 Corchorus olitorius cultivar O-4 contig15819, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37328

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3918--3951
18
1.9
17
88
5
50
70
2
2
23
1.15
4792--4831
18
2.2
18
86
4
53
45
5
20
30
1.72
13093--13356
76
3.5
78
91
5
423
29
17
17
35
1.92
13093--13356
39
6.9
39
92
2
432
29
17
17
35
1.92
13093--13359
113
2.3
113
93
2
417
29
17
17
35
1.92
13332--13576
35
6.8
34
80
13
269
27
15
18
38
1.91
13069--13577
39
13.8
36
82
9
272
28
16
17
37
1.91
13370--13594
107
2.1
103
80
12
240
28
14
17
39
1.89
14407--14456
21
2.4
21
82
0
55
18
44
26
12
1.84
14668--15274
50
12.1
50
83
4
468
44
5
13
36
1.66
14719--14758
21
2.0
20
85
5
53
42
5
15
37
1.68
14667--15265
100
6.0
100
80
5
559
43
5
14
36
1.67
14660--15274
252
2.5
251
83
3
742
44
5
13
36
1.67
15750--16063
48
6.6
48
87
3
465
10
21
22
44
1.82
15750--16259
96
5.5
96
84
6
690
10
23
22
44
1.83
16066--16292
48
4.8
48
85
1
287
10
25
21
42
1.85
15754--16259
228
2.2
227
85
7
658
10
23
22
44
1.83
16253--16436
41
4.5
41
79
5
185
12
29
19
38
1.88
16217--16589
41
8.9
41
75
9
166
14
26
21
37
1.92
16294--16492
79
2.5
79
82
4
211
13
26
22
37
1.91
16377--16532
40
3.9
40
80
0
159
14
25
26
33
1.94
16506--16675
50
3.4
49
79
5
189
15
24
21
38
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22855--22916
27
2.3
27
94
0
106
19
16
29
35
1.93
22868--22927
27
2.2
27
90
0
93
16
16
28
38
1.91
30404--30443
15
2.6
16
88
4
55
62
12
7
17
1.52
36732--36770
16
2.4
17
83
12
55
66
12
5
15
1.41

Tables:   1

The End!