Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015787.1 Corchorus olitorius cultivar O-4 contig15820, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5001
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27


Found at i:4696 original size:15 final size:15

Alignment explanation


    Indices: 4676--4715  Score: 80
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       4666 AGCAATCTTT

                           
       4676 GCTTTCTCCTGTTTA
          1 GCTTTCTCCTGTTTA

                           
       4691 GCTTTCTCCTGTTTA
          1 GCTTTCTCCTGTTTA

                      
       4706 GCTTTCTCCT
          1 GCTTTCTCCT

       4716 TAACTTCTTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   25  1.00

ACGTcount: A:0.05, C:0.30, G:0.12, T:0.53


Consensus pattern (15 bp):   
GCTTTCTCCTGTTTA
Done.