Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015789.1 Corchorus olitorius cultivar O-4 contig15822, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66821

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11720--11759
21
1.9
21
94
0
71
35
10
20
35
1.86
14321--14369
24
2.0
24
100
0
98
36
26
12
24
1.91
31603--31676
34
2.3
33
82
15
93
27
13
18
40
1.88
32881--32937
22
2.6
22
83
8
71
33
15
10
40
1.82
32908--33069
66
2.4
67
80
10
181
34
11
9
44
1.73
33056--33239
22
8.5
22
71
5
115
35
14
9
40
1.79
33099--33239
43
3.3
43
78
5
133
34
14
9
41
1.77
33171--33239
21
3.2
20
78
11
75
34
14
8
42
1.77
33258--33350
22
4.2
21
70
8
69
33
11
9
45
1.74
35469--35514
23
2.0
22
83
4
56
45
0
6
47
1.28
37488--37739
131
2.0
127
89
6
395
37
11
2
49
1.51
42800--42883
44
1.9
44
97
0
159
41
25
11
21
1.87
44481--44516
19
1.9
18
94
5
63
38
11
16
33
1.84
45041--45070
11
2.7
11
100
0
60
50
0
0
50
1.00
57826--57877
26
2.0
27
88
3
79
44
5
25
25
1.76
61199--61231
11
3.0
11
87
12
50
72
0
27
0
0.85
63523--63576
2
27.0
2
96
0
99
48
1
0
50
1.11
66784--66821
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!