Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015791.1 Corchorus olitorius cultivar O-4 contig15824, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68393

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
973--1177
22
9.2
22
76
13
147
34
15
10
39
1.81
973--1208
44
5.3
43
75
10
156
34
15
9
40
1.79
1003--1177
68
2.6
65
77
16
153
35
15
9
39
1.80
1715--1749
6
5.8
6
89
0
52
48
2
14
34
1.58
10137--10176
18
2.3
17
91
8
71
25
15
12
47
1.80
13111--13139
15
1.9
15
100
0
58
55
0
3
41
1.17
13652--13684
13
2.7
12
90
9
57
39
0
0
60
0.97
13818--13851
17
2.0
17
94
0
59
26
44
23
5
1.76
22607--22675
21
3.2
22
68
15
72
50
17
7
24
1.71
22590--22710
42
2.9
42
97
0
224
47
15
7
29
1.73
22776--22892
57
2.1
57
98
1
227
40
1
25
32
1.66
24920--25071
76
2.0
76
81
7
175
17
29
27
25
1.98
32674--32727
20
2.7
20
75
16
58
66
1
5
25
1.23
37587--37645
30
2.0
30
96
0
109
38
11
6
42
1.68
38712--38745
2
17.0
2
100
0
68
50
0
0
50
1.00
41963--42017
21
2.8
19
81
10
74
30
21
10
36
1.88
43325--44164
440
1.9
433
84
6
1067
42
13
14
29
1.84
45556--45605
2
25.0
2
95
0
91
48
2
0
50
1.12
47172--47269
51
1.9
51
81
8
119
23
22
14
39
1.90
49456--49595
22
6.3
22
75
6
102
35
8
18
37
1.82
50176--50226
22
2.3
23
79
6
59
33
5
17
43
1.73
50185--50226
22
1.9
22
90
0
66
33
7
21
38
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50494--50591
22
4.7
20
77
12
81
35
9
15
39
1.79
50517--50591
20
3.6
21
83
8
91
37
9
17
36
1.82
50558--50600
22
2.0
22
85
0
59
44
9
13
32
1.76
51108--51164
22
2.6
22
71
15
55
38
10
12
38
1.77
51454--51504
22
2.3
23
79
6
59
33
5
17
43
1.73
51463--51504
22
1.9
22
90
0
66
33
7
21
38
1.81
51769--51866
22
4.7
20
77
12
81
35
9
15
39
1.79
51792--51866
20
3.6
21
83
8
91
37
9
17
36
1.82
51833--51875
22
2.0
22
85
0
59
44
9
13
32
1.76
55076--55125
16
3.1
17
75
21
54
12
10
32
46
1.74
55067--55143
31
2.4
31
84
4
91
7
9
32
50
1.63
55099--55161
16
4.1
15
76
8
54
6
4
31
57
1.45
55067--55161
31
3.0
31
83
4
84
8
7
31
52
1.59
57505--57894
206
1.9
203
88
2
575
28
17
18
35
1.94
59435--59487
25
2.1
25
85
3
70
52
0
0
47
1.00
59454--59488
16
2.1
17
89
5
54
57
0
0
42
0.99
60198--60222
11
2.3
11
100
0
50
48
8
0
44
1.32
60266--60314
24
2.0
24
100
0
98
38
16
4
40
1.67
64987--65017
2
15.5
2
100
0
62
48
0
0
51
1.00
66311--66435
44
2.8
44
87
0
169
41
12
12
32
1.81
66311--66547
22
10.9
22
70
13
116
39
10
18
31
1.85
66565--66807
22
11.0
23
73
12
100
32
10
17
39
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66565--66784
44
5.0
43
71
14
155
31
10
17
39
1.85
66665--66808
44
3.3
44
77
6
132
33
12
15
38
1.85

Tables:   1

The End!