Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015798.1 Corchorus olitorius cultivar O-4 contig15831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59445

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2190--2256
31
2.2
31
88
0
98
37
4
13
44
1.64
2763--2792
15
2.0
15
100
0
60
40
13
26
20
1.89
3589--3629
3
14.0
3
89
5
66
34
2
0
63
1.08
10357--10388
17
1.9
16
93
6
55
15
0
0
84
0.63
19159--19223
21
3.1
21
88
0
94
32
18
20
29
1.96
21792--21845
16
3.4
16
73
14
58
7
16
37
38
1.77
21803--21885
39
2.2
38
84
2
103
10
19
34
34
1.87
22716--22795
32
2.5
32
82
8
92
12
22
33
31
1.91
22715--22797
16
5.2
15
72
16
60
12
21
34
31
1.90
23286--23340
22
2.5
22
90
0
83
7
25
43
23
1.79
26249--26413
57
2.9
57
91
1
278
38
14
15
32
1.87
29717--29760
23
1.9
23
95
0
79
47
11
15
25
1.79
30901--30936
16
2.2
16
95
0
63
22
13
5
58
1.56
35836--35896
32
1.9
33
86
6
90
26
29
18
26
1.98
38163--38222
2
29.0
2
93
6
102
48
0
3
48
1.18
40539--40577
20
2.0
20
100
0
78
25
25
23
25
2.00
50775--50799
13
1.9
13
100
0
50
16
12
24
48
1.79

Tables:   1

The End!