Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015799.1 Corchorus olitorius cultivar O-4 contig15832, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4526
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:115 original size:30 final size:31

Alignment explanation


    Indices: 73--162  Score: 91
    Period size: 30  Copynumber: 3.0  Consensus size: 31

         63 TTGAGAAGTT

                                           
         73 TGGTAAGG-TTGTGAAAGTTGAGAAAAAGAA
          1 TGGTAAGGTTTGTGAAAGTTGAGAAAAAGAA

                                       * *   
        103 TGGT-AGGTTTGTGAGAA-TTGAGGAAGATG-A
          1 TGGTAAGGTTTGTGA-AAGTTGA-GAAAAAGAA

                                  *        
        133 TGGTAAGGTTTG-GAAAGTTGAAAAGAAAGA
          1 TGGTAAGGTTTGTGAAAGTTGAGAA-AAAGA

        163 TGAGGAAAAG


Statistics
Matches: 48,  Mismatches: 5, Indels: 13
        0.73            0.08        0.20

Matches are distributed among these distances:
  29    7  0.15
  30   27  0.56
  31   14  0.29

ACGTcount: A:0.39, C:0.00, G:0.36, T:0.26


Consensus pattern (31 bp):   
TGGTAAGGTTTGTGAAAGTTGAGAAAAAGAA
Done.