Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015803.1 Corchorus olitorius cultivar O-4 contig15836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12728

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3725--3781
27
2.1
27
93
0
96
21
22
15
40
1.91
5512--5549
16
2.4
16
86
8
51
78
2
18
0
0.86
8045--8079
17
2.2
17
90
10
56
77
0
22
0
0.78
8046--8072
13
2.1
13
100
0
54
77
0
22
0
0.76
8184--8226
21
2.0
21
90
4
68
76
0
23
0
0.78
8194--8265
16
4.4
16
80
1
81
77
0
18
4
0.92
8184--8234
23
2.3
23
86
10
70
78
0
21
0
0.75
8176--8233
29
2.0
30
86
6
84
75
0
24
0
0.80
8194--8258
23
2.7
24
81
11
62
78
0
18
3
0.88
11505--11593
46
1.9
46
90
0
142
13
34
38
13
1.84
11511--11603
46
2.0
46
87
4
134
15
33
37
13
1.87
11692--11733
22
1.9
22
85
9
59
76
0
21
2
0.90
11684--11757
14
5.7
13
69
16
55
72
0
25
1
0.92
11698--11759
20
2.9
21
78
7
54
74
0
24
1
0.91
11834--11900
27
2.5
27
71
9
64
35
16
13
34
1.88

Tables:   1

The End!