Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015806.1 Corchorus olitorius cultivar O-4 contig15839, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28791

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
769--810
15
2.7
15
96
3
75
11
7
14
66
1.43
7943--7984
15
2.7
15
96
3
75
11
7
14
66
1.43
12104--12149
22
2.0
23
83
4
58
17
10
34
36
1.85
12247--12337
16
6.3
14
66
19
53
45
1
2
51
1.20
12224--12273
21
2.4
21
74
19
50
42
0
2
56
1.11
12228--12337
57
2.0
55
82
13
136
42
0
2
53
1.21
12308--12361
18
2.8
18
81
10
63
53
1
0
44
1.11
14026--14077
17
3.1
16
75
8
59
5
5
11
76
1.13
14028--14075
16
2.9
16
81
6
60
6
6
12
75
1.19
14046--14098
22
2.4
23
78
6
56
11
7
13
67
1.40
14356--14436
42
1.9
42
97
0
153
29
7
16
46
1.73
19647--20126
240
2.0
238
91
2
784
35
12
10
41
1.77
20203--20362
22
7.2
22
73
9
112
37
16
8
37
1.79
20203--20362
67
2.4
67
78
10
168
37
16
8
37
1.79
20328--20370
22
2.0
21
86
4
59
25
23
11
39
1.88
21342--21431
45
2.1
43
89
6
137
38
22
4
34
1.74
22282--22320
2
19.5
2
100
0
78
51
0
0
48
1.00
24800--24841
15
2.7
15
92
3
66
11
9
14
64
1.50
25247--25313
25
2.8
23
84
10
89
43
8
14
32
1.77
28194--28223
15
2.1
14
93
6
51
13
16
6
63
1.50

Tables:   1

The End!