Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015807.1 Corchorus olitorius cultivar O-4 contig15840, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17805

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1375--1416
15
2.7
15
85
3
57
14
7
14
64
1.48
4780--4923
74
1.9
74
97
0
270
34
18
11
36
1.87
5592--6130
268
2.0
272
96
2
1005
33
16
14
34
1.90
8056--8107
27
1.9
27
84
0
68
7
7
26
57
1.54
8569--8630
27
2.3
27
81
15
67
46
6
0
46
1.28
9715--9948
22
10.5
22
71
11
113
36
9
16
37
1.81
9712--9948
66
3.5
66
81
7
230
36
9
16
37
1.81
9717--10679
44
21.9
42
66
18
226
39
9
16
34
1.81
9953--10323
22
16.7
21
70
15
180
39
10
16
33
1.84
10181--10348
89
1.9
88
81
6
205
40
11
13
33
1.82
10107--10678
22
25.9
22
66
16
132
40
9
15
34
1.80
10385--10779
22
18.2
22
72
8
195
39
9
16
34
1.80
10573--10652
23
3.5
23
83
10
94
40
6
17
36
1.75
10909--10946
20
1.9
20
94
0
67
44
7
7
39
1.63
15528--15566
20
1.9
21
89
5
62
0
25
0
74
0.82

Tables:   1

The End!