Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015811.1 Corchorus olitorius cultivar O-4 contig15844, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3918
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Found at i:1844 original size:13 final size:13

Alignment explanation


    Indices: 1826--1850  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       1816 TTTTTACCAC

                         
       1826 CTTAAAATTATTG
          1 CTTAAAATTATTG

                        
       1839 CTTAAAATTATT
          1 CTTAAAATTATT

       1851 TTTTGGCAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.40, C:0.08, G:0.04, T:0.48


Consensus pattern (13 bp):   
CTTAAAATTATTG
Done.