Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015815.1 Corchorus olitorius cultivar O-4 contig15848, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62189

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12--40
2
14.5
2
100
0
58
48
0
0
51
1.00
6427--6468
19
2.3
18
84
8
57
61
0
4
33
1.17
6432--6468
19
2.0
19
89
5
58
64
0
2
32
1.07
48593--48632
22
1.9
22
90
10
66
22
25
20
32
1.98
52200--52251
26
2.0
26
84
0
68
61
5
11
21
1.50
58206--58235
13
2.3
13
100
0
60
66
6
13
13
1.43
58173--58222
20
2.5
20
100
0
100
62
8
14
16
1.54
58257--58330
14
5.7
13
72
12
62
58
18
12
10
1.63
58257--58317
13
4.7
13
72
13
54
57
18
13
11
1.65
58264--58375
38
2.9
38
83
0
161
58
16
11
12
1.62

Tables:   1

The End!