Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015816.1 Corchorus olitorius cultivar O-4 contig15849, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57324

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461--495
17
2.0
18
94
5
63
40
0
5
54
1.24
3480--3523
22
2.0
22
86
0
61
6
31
43
18
1.76
3674--3698
12
2.1
12
100
0
50
36
16
0
48
1.46
22738--22808
36
2.0
35
86
10
101
46
21
5
26
1.73
27954--27990
18
2.1
18
100
0
74
45
21
10
21
1.82
28691--28741
12
4.7
12
72
22
58
76
5
11
5
1.14
28693--28754
15
4.1
15
71
19
56
75
6
11
6
1.17
28686--28744
31
1.9
31
96
0
109
77
6
10
5
1.10
29699--29806
50
2.2
50
89
0
162
43
13
9
33
1.76
32314--32370
29
1.9
30
85
3
80
45
10
21
22
1.82
34321--34450
65
2.0
65
96
0
242
29
26
16
28
1.97
34379--34678
100
3.0
100
92
0
512
33
21
13
32
1.92
47355--47411
27
2.1
27
87
6
80
31
14
7
47
1.70
50991--51020
15
1.9
16
93
6
53
43
0
3
53
1.17
51371--54689
334
10.0
332
79
6
3118
34
15
14
36
1.88
51371--54689
665
5.0
663
82
6
3234
34
15
14
36
1.88
55194--56154
334
2.9
330
85
4
1378
33
14
15
36
1.88

Tables:   1

The End!