Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015819.1 Corchorus olitorius cultivar O-4 contig15852, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133682

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1243--1280
3
12.7
3
89
10
60
63
0
0
36
0.95
5623--5668
24
1.9
24
82
8
58
32
41
15
10
1.82
28670--28706
6
6.3
6
96
3
67
86
13
0
0
0.57
34989--35016
13
2.2
13
100
0
56
71
14
14
0
1.15
38899--39036
31
4.5
31
87
1
170
32
23
26
18
1.97
38918--39036
61
1.9
62
84
1
159
34
24
25
15
1.95
40186--40260
29
2.6
29
81
10
82
41
16
22
20
1.90
54176--54231
27
2.1
27
86
6
78
46
0
7
46
1.30
54242--54291
27
2.0
24
84
11
64
56
0
0
44
0.99
57036--57073
18
2.1
18
85
9
51
26
13
18
42
1.87
59208--59263
26
2.2
26
86
0
76
57
7
12
23
1.60
79262--79298
18
2.1
18
89
0
56
45
16
8
29
1.76
83372--83520
72
2.1
72
94
0
262
32
15
16
35
1.90
87507--87679
88
2.0
88
94
0
301
38
14
15
32
1.87
98664--98704
20
2.0
20
100
0
82
36
4
19
39
1.73
102657--102696
2
20.0
2
100
0
80
50
0
0
50
1.00
102839--102880
20
2.1
20
100
0
84
23
14
14
47
1.80
104342--104384
21
2.0
21
100
0
86
18
4
9
67
1.36
111798--111926
51
2.5
51
97
0
240
40
27
15
16
1.89
114292--114453
60
2.7
59
80
6
168
43
18
19
19
1.89
114318--114423
28
3.6
29
69
18
85
50
16
17
15
1.79
114707--114735
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116072--116127
28
2.0
29
86
10
80
26
17
17
37
1.93
118122--118178
29
2.0
29
86
6
80
38
14
26
21
1.91
120171--120223
27
2.1
26
86
10
74
28
20
18
32
1.97
124589--124652
31
2.0
32
93
3
112
40
9
7
42
1.66
125077--125134
31
1.9
31
92
3
100
29
22
6
41
1.80
125235--125275
8
5.4
8
88
11
68
24
12
0
63
1.28
125235--125289
22
2.5
22
83
16
62
23
10
1
63
1.36
126994--127038
22
2.1
22
87
4
65
40
4
15
40
1.67
130912--130975
33
2.0
33
90
3
103
29
9
17
43
1.80

Tables:   1

The End!