Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015821.1 Corchorus olitorius cultivar O-4 contig15854, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139823

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1152--1307
78
2.1
77
86
4
219
39
8
8
43
1.66
1220--1546
103
3.1
104
82
7
374
38
11
7
42
1.69
3144--3176
16
2.1
17
88
11
52
63
18
0
18
1.31
4900--4928
15
1.9
15
100
0
58
55
24
0
20
1.44
8739--8766
5
5.6
5
100
0
56
0
17
0
82
0.68
11448--11960
268
1.9
267
85
1
713
37
14
12
34
1.85
11727--13748
333
6.2
328
78
8
1895
37
16
13
32
1.88
13764--15409
331
5.0
326
77
9
1372
36
15
14
32
1.89
15794--15823
15
1.9
16
93
6
53
53
3
0
43
1.17
16109--16142
2
17.0
2
90
0
50
52
0
2
44
1.16
16740--16775
3
12.0
3
100
0
72
33
33
0
33
1.58
17966--17992
3
9.0
3
100
0
54
0
33
0
66
0.92
20827--20938
57
2.0
57
94
0
197
36
26
1
34
1.67
20963--20989
11
2.5
11
100
0
54
51
7
18
22
1.70
21017--21097
42
1.9
42
87
5
119
30
8
13
46
1.73
21412--21437
13
2.0
13
100
0
52
7
15
15
61
1.55
22773--22921
82
1.8
80
86
2
217
22
17
8
51
1.72
24621--24668
17
2.6
20
75
21
59
18
8
16
56
1.65
25208--25255
24
2.0
24
100
0
96
54
4
20
20
1.61
25444--25490
24
2.0
24
100
0
94
34
12
14
38
1.85
25959--25983
2
12.5
2
100
0
50
48
0
0
52
1.00
29086--29126
2
20.5
2
94
0
73
46
2
0
51
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41941--41996
6
9.8
6
82
7
64
0
16
3
80
0.85
43054--43120
21
2.9
23
75
16
75
47
19
1
31
1.58
51066--51091
13
2.0
13
100
0
52
53
0
0
46
1.00
77504--77535
16
2.0
16
100
0
64
37
0
43
18
1.51
79071--79108
10
3.7
10
86
6
58
65
0
34
0
0.93
79069--79108
21
1.9
21
94
0
71
65
0
35
0
0.93
85812--85855
15
2.9
15
79
0
52
56
0
34
9
1.31
86940--86971
16
2.0
16
100
0
64
0
6
18
75
1.01
86976--87095
57
2.1
58
93
4
208
41
6
20
30
1.78
118566--118678
55
2.1
55
94
0
199
40
17
7
34
1.77
125162--125228
34
2.0
34
97
2
127
29
11
29
28
1.92
131430--131531
51
2.0
52
81
9
120
22
23
13
40
1.90
139342--139411
36
1.9
36
91
0
113
21
10
8
60
1.55

Tables:   1

The End!