Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015823.1 Corchorus olitorius cultivar O-4 contig15856, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43237

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1810--1842
2
17.0
2
93
6
59
48
0
0
51
1.00
1807--1842
17
2.1
17
100
0
72
47
0
0
52
1.00
1812--1841
15
2.0
15
100
0
60
46
0
0
53
1.00
2500--2717
60
3.7
58
86
5
280
44
11
13
31
1.79
2500--2717
118
1.8
120
86
6
318
44
11
13
31
1.79
4347--4627
142
2.0
140
83
10
358
41
16
15
26
1.88
8928--8989
29
2.1
30
84
6
81
33
19
6
40
1.77
8966--9031
32
2.1
32
91
2
107
39
21
3
36
1.69
9418--9672
131
2.0
128
88
6
385
36
10
1
50
1.48
9658--9696
14
2.9
13
80
3
51
41
2
2
53
1.28
11498--11523
2
13.0
2
100
0
52
50
0
0
50
1.00
19217--19314
50
1.9
51
91
2
162
48
16
12
22
1.79
22698--22988
147
2.0
146
82
5
354
42
9
31
15
1.80
25167--25191
6
4.2
6
100
0
50
32
36
16
16
1.90
32805--32831
13
2.1
13
100
0
54
85
0
14
0
0.61
35939--35971
16
2.1
16
100
0
66
18
12
6
63
1.48
37766--38012
124
1.9
128
84
11
328
51
2
10
36
1.47
40270--40313
12
3.6
12
81
6
61
36
13
22
27
1.92
41780--41807
14
2.0
14
100
0
56
57
0
0
42
0.99
41847--41903
29
2.0
29
100
0
114
38
5
0
56
1.22
42741--42776
18
2.0
18
88
0
54
25
2
8
63
1.36

Tables:   1

The End!