Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015825.1 Corchorus olitorius cultivar O-4 contig15858, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43372

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--44
2
18.5
2
100
0
74
48
0
0
51
1.00
4804--4828
12
2.1
12
100
0
50
0
24
0
76
0.80
5507--5549
23
2.0
22
86
9
61
27
23
16
32
1.96
5913--5979
30
2.3
30
86
2
91
32
28
11
26
1.92
6230--6301
29
2.5
30
84
8
87
29
8
25
37
1.85
6793--6835
9
4.9
8
81
18
50
0
39
0
60
0.97
6787--6831
14
2.9
17
75
21
53
0
40
0
60
0.97
12852--13102
85
3.0
84
88
1
371
35
17
9
37
1.83
19911--20235
178
1.8
178
86
4
476
36
16
12
34
1.87
19911--20275
178
2.1
178
83
4
450
36
16
12
34
1.87
20964--20998
17
2.1
17
88
0
52
11
17
34
37
1.85
22521--22563
22
1.9
23
90
4
70
74
2
6
16
1.14
24019--26544
332
7.6
330
79
6
2382
37
15
14
33
1.87
24058--26252
976
2.2
986
80
6
2383
37
14
14
33
1.87
28760--29013
130
2.0
127
91
6
419
50
1
10
37
1.49
42200--42244
2
21.0
2
82
13
54
48
0
44
6
1.29
42910--42959
21
2.4
21
96
3
93
50
4
4
42
1.40
43269--43294
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!