Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015826.1 Corchorus olitorius cultivar O-4 contig15859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46048

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1168--1206
2
20.0
2
94
5
71
48
0
0
51
1.00
2031--2062
2
15.5
2
93
6
55
46
0
3
50
1.17
2027--2060
17
2.1
16
94
5
59
44
0
5
50
1.26
4240--4371
66
2.0
66
94
2
230
39
19
11
29
1.87
11172--11241
27
2.6
27
100
0
140
37
4
12
45
1.62
18024--18153
60
2.2
61
83
4
165
30
23
9
36
1.86
18992--19130
59
2.3
60
86
4
185
39
17
14
28
1.89
19238--19336
31
3.3
31
70
23
75
36
15
10
38
1.81
21411--21448
19
2.0
19
90
10
60
42
31
15
10
1.81
36425--36478
22
2.3
23
81
12
65
38
3
0
57
1.17
39055--39098
22
2.0
22
100
0
88
45
0
22
31
1.53
43638--43668
11
2.8
11
95
0
53
48
6
12
32
1.67
45998--46045
2
24.5
2
91
4
80
50
2
0
47
1.12

Tables:   1

The End!