Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015830.1 Corchorus olitorius cultivar O-4 contig15863, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67950

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14184--14227
22
2.0
21
91
4
70
27
2
25
45
1.65
17948--17994
22
2.1
22
84
7
60
27
14
10
46
1.78
18091--18135
23
1.9
24
90
4
74
40
17
11
31
1.85
19592--19643
26
2.0
25
85
14
70
50
1
5
42
1.37
20877--21604
254
2.9
253
86
4
999
38
16
16
29
1.90
21377--24382
334
9.1
335
73
11
1555
35
15
14
34
1.88
22598--24384
339
5.4
330
76
8
1435
35
15
14
34
1.88
24798--24883
42
2.0
43
82
11
104
45
9
4
40
1.57
25021--25075
13
4.2
13
76
17
60
50
3
21
23
1.64
31266--31349
29
2.8
30
83
8
100
19
23
14
42
1.87
31266--31342
31
2.6
29
84
12
79
18
24
14
42
1.87
45435--45471
13
2.8
14
80
16
51
35
8
37
18
1.81
51791--51826
11
3.4
11
92
3
56
47
11
0
41
1.39
60172--60243
36
2.0
36
97
0
135
31
4
11
52
1.56
64595--65842
325
3.8
321
79
8
1269
35
16
15
32
1.91
65618--66111
270
1.8
269
84
4
672
34
14
15
34
1.89
65889--67743
330
5.6
329
82
6
1973
35
15
15
34
1.89
65889--67743
661
2.8
650
83
6
2435
35
15
15
34
1.89

Tables:   1

The End!