Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015834.1 Corchorus olitorius cultivar O-4 contig15867, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66770

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4775--4817
21
2.0
21
95
0
77
46
25
13
13
1.81
9151--9255
31
3.5
30
71
15
99
24
20
19
36
1.95
9151--9308
60
2.6
60
85
5
194
27
17
17
36
1.93
9746--9771
2
13.0
2
100
0
52
50
0
0
50
1.00
10322--10350
11
2.7
11
94
5
51
0
27
62
10
1.28
10383--10488
41
2.6
41
93
0
185
27
31
16
25
1.96
12198--12253
26
2.2
26
87
6
78
21
8
5
64
1.42
14397--18303
332
11.9
331
73
13
2691
33
14
16
35
1.90
15571--18303
650
4.1
646
81
7
2948
33
14
16
35
1.89
19185--19218
17
1.9
18
88
5
52
38
8
20
32
1.84
19216--19341
22
5.7
23
74
7
93
38
8
11
42
1.72
19628--19703
30
2.5
30
87
8
102
44
15
10
28
1.80
19839--19877
18
2.1
19
86
13
55
61
0
10
28
1.28
19839--19878
20
2.1
18
86
9
53
62
0
10
27
1.27
20684--20732
2
24.5
2
85
0
53
40
0
4
55
1.19
32452--32487
19
2.0
18
89
10
56
16
33
5
44
1.71
33778--33835
30
1.9
30
96
0
107
25
22
3
48
1.66
39182--39214
7
4.7
7
100
0
66
0
30
0
69
0.88
39891--40026
31
4.3
31
82
2
137
19
23
25
32
1.97
44384--44425
11
3.7
11
83
3
57
78
16
4
0
0.91
44384--44425
6
7.3
6
84
10
52
78
16
4
0
0.91
46249--46363
41
2.8
41
100
0
230
33
2
15
47
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46278--46349
15
5.1
15
70
13
71
33
1
18
47
1.57
46273--46310
15
2.4
17
78
17
53
34
0
18
47
1.49
58908--59161
102
2.5
102
92
0
409
10
14
32
42
1.80
58901--59186
102
2.8
100
89
2
394
10
14
34
40
1.80
59112--59547
135
3.2
135
87
1
590
10
18
30
41
1.84
59112--59547
45
9.7
45
86
2
518
10
18
30
41
1.84
64573--64779
51
4.3
51
80
14
276
14
14
46
24
1.82
64595--64791
90
2.2
92
78
13
246
14
14
46
24
1.82
66607--66674
7
9.6
7
72
20
52
54
1
0
44
1.09

Tables:   1

The End!