Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015836.1 Corchorus olitorius cultivar O-4 contig15869, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53390

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13853--14069
107
2.0
109
91
1
357
41
23
15
19
1.89
18657--18725
25
2.7
26
97
2
131
49
24
21
4
1.68
20108--20175
33
2.1
32
89
5
102
36
23
4
35
1.75
23141--23192
27
2.0
27
88
3
79
42
9
5
42
1.61
27436--27477
19
2.2
20
83
8
52
69
2
7
21
1.25
29330--29478
74
2.0
74
96
0
271
20
24
15
38
1.92
32705--32733
14
2.1
14
100
0
58
58
27
0
13
1.36
32914--32941
2
14.0
2
100
0
56
50
0
0
50
1.00
51974--52036
23
2.8
23
95
2
110
41
3
3
52
1.33
52414--52451
2
19.0
2
84
10
51
50
5
0
44
1.24
52405--52452
10
4.5
11
82
14
57
47
10
0
41
1.37
52414--52457
10
4.0
12
85
11
51
47
9
0
43
1.35

Tables:   1

The End!