Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015837.1 Corchorus olitorius cultivar O-4 contig15870, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127048

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30--58
2
14.5
2
100
0
58
51
0
0
48
1.00
79--112
15
2.3
15
89
0
50
79
5
5
8
1.05
2323--2374
17
3.0
17
94
5
95
30
0
57
11
1.34
2318--2372
18
3.1
18
92
7
94
30
1
56
10
1.44
3692--3742
5
10.6
5
91
4
79
78
1
0
19
0.85
13632--13716
42
2.0
42
95
0
152
27
17
24
30
1.97
13749--13791
22
2.0
20
82
8
50
46
2
11
39
1.53
13743--13876
65
2.1
65
97
1
252
42
8
11
37
1.72
20901--20931
13
2.4
13
94
0
53
35
16
19
29
1.93
26536--26633
42
2.3
42
78
0
124
5
39
13
41
1.66
28590--28652
30
2.1
31
96
3
119
25
23
3
47
1.66
43211--43235
2
12.5
2
100
0
50
0
0
48
52
1.00
46537--46575
20
2.0
20
94
0
69
33
7
30
28
1.85
55138--55207
36
1.9
36
94
0
122
60
7
8
24
1.51
55659--56006
180
1.9
180
94
0
606
40
7
13
38
1.73
57627--57808
95
1.9
95
94
0
319
25
17
11
45
1.82
60614--60658
21
2.1
21
83
0
54
2
62
2
33
1.20
82217--82259
21
2.0
21
82
8
52
79
2
2
16
0.95
84184--84211
13
2.2
13
100
0
56
25
7
39
28
1.82
84584--84615
1
32.0
1
100
0
64
0
0
0
100
0.00
92616--92657
21
1.9
21
85
9
57
66
4
26
2
1.23
92698--92741
5
8.4
5
80
9
52
0
25
0
75
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92697--92740
11
4.1
11
85
5
63
0
27
0
72
0.85
92698--92741
21
2.1
21
91
0
70
0
25
0
75
0.81
92697--92741
16
2.8
16
83
10
56
0
26
0
73
0.84
93389--93521
53
2.5
53
88
2
187
30
21
9
39
1.85
97070--97104
18
2.0
18
94
5
63
54
22
11
11
1.68
102921--102945
11
2.3
11
100
0
50
24
8
0
68
1.16

Tables:   1

The End!