Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015840.1 Corchorus olitorius cultivar O-4 contig15873, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95262
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:1262 original size:21 final size:21
Alignment explanation
Indices: 1238--1299 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
1228 CAACTTAATA
1238 AAATAACTGCTTTTTAACCTT
1 AAATAACTGCTTTTTAACCTT
** * *
1259 AAAT---T--TTTTTTGCATA
1 AAATAACTGCTTTTTAACCTT
1275 AAATAACTGCTTTTTAACCTT
1 AAATAACTGCTTTTTAACCTT
1296 AAAT
1 AAAT
1300 TTTTTTGCTT
Statistics
Matches: 28, Mismatches: 8, Indels: 10
0.61 0.17 0.22
Matches are distributed among these distances:
16 11 0.39
18 1 0.04
19 1 0.04
21 15 0.54
ACGTcount: A:0.35, C:0.15, G:0.05, T:0.45
Consensus pattern (21 bp):
AAATAACTGCTTTTTAACCTT
Found at i:1328 original size:37 final size:37
Alignment explanation
Indices: 1235--1305 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
1225 ACCCAACTTA
1235 ATAAAATAACTGCTTTTTAACCTTAAATTTTTTTTGC
1 ATAAAATAACTGCTTTTTAACCTTAAATTTTTTTTGC
1272 ATAAAATAACTGCTTTTTAACCTTAAATTTTTTT
1 ATAAAATAACTGCTTTTTAACCTTAAATTTTTTT
1306 GCTTAAATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.34, C:0.13, G:0.04, T:0.49
Consensus pattern (37 bp):
ATAAAATAACTGCTTTTTAACCTTAAATTTTTTTTGC
Found at i:3272 original size:31 final size:31
Alignment explanation
Indices: 3205--6012 Score: 3299
Period size: 31 Copynumber: 96.5 Consensus size: 31
3195 TTCAGTAGGG
*
3205 CATATAGTTGCATATTCAGTAGGGCCCAT--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3234 -ATATAGTTCCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3264 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3295 TATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
3326 CATGTAGTTGCATATTCAGTAGGACTCGTAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
3357 CATATAGTTACATATTCAGTAGGG---GT--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
3383 CATATAGTAGCATATTCATTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3409 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
3440 CATGTAGTTGTATATTCAGTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3466 CATATAGTTGCATATTCAGTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3492 CATATAGTTACATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
3523 CATGTAATTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
3554 CATGTAGTTGCATATTCAGTAGGGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3585 CATATAGTTGCATATTCAGTAGTG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3611 CATATAGTTGCATATTCAGTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3637 CATATAGTTTCATATTCAGTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3663 CATATAGTTTCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3694 CATATAGTTGCATATTCAGTAGGG----GA-
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3720 CATATAGTTGCATATTCAGTAGGG-GC-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
3747 CATATAGTCGCATGTTCAGTAGGG-GC-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3774 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
3805 CATGTAGTTGCATATTCAATAGGG-----GC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3831 CATATAGTTGCATATTCAGTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3857 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3888 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
3919 CATATAGTTGCATATTCAGTAGGGGC-CATAC
1 CATATAGTTGCATATTCAGTA-GGGCTCATAC
*
3950 CATATAGTTGCATATTCAGTAGGG-----GC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
3976 CATATAGTTGCATATTCAGTAGGGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4007 CATATAGTTGCATATTCAATAGGGCTCAT--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4036 --T-TAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
4064 CATATAGTTGCACATTCAGTTGGTCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4095 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
4126 CATGTGGTTGCATATTCAGTAGGGCTCATAT
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
4157 CATGTGGTTGCATATTCAGTAAGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4188 CATGTAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4219 CATATAGTTGCATATTCAGTAGGG-T--T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4245 CATATAGTTGCATATTCAGTAGGG-GC-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4272 CATATAGTTGCATATTCAGTAGAGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
4303 CATGTAGTTGCATATTCAGTAGCGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4334 CATATAGTTGCATATTCAGTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4360 CATATAGTTGCATATTCAGTAGGGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4391 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4422 CATATAGTTGCATATTCAGTAGGGCTCATAG
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
4453 CGTATAGTTGAATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
4484 CATGTGGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4515 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4546 CATATAGTTGCATATTCAGTAGGGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4577 CATATAGTTGCATATTCAGTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4603 CATATAGTTGCATATTCAGTAGGG-AC-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4630 CATATAGGTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4661 CATATAGTTGCATATTCAGTAGGGCTCATGC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
4692 CATATAGTTTCATATTCAGTAGGGGTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4723 CATATAGTTGCATATTTAGTAGGGCTCAT--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4752 -ATA-A-TTGCATATTCAGTAGGG-T--T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4775 CATATAGTTGCATATTCAGTAGGGCTCATGC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4806 CATATAGTTGCATATTCAGTAGGG---GT--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4832 CATATAGTTGCATATTCAGTAGGG-GC-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
4859 CATATAGTTGCATACTT-AGTAGGGGCT--T--
1 CATATAGTTGCATA-TTCAGTA-GGGCTCATAC
*
4887 -ATATAGTTGCATATTCAGTAGGGCTCATTC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
4917 CATTTAGTTGCATATTCAGTAGGGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
4948 CATATAGTTGCATATTTAGTAGGG-GC-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
4975 CATATAGTTGCATATTCAGTAGGG-AC-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
5002 CATATAGGTGCATATTCAGTAGTGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5033 CATATAGTTGCATATTCAGTAGGGCT--T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5060 -ATATAGTTGCATATTCAATAGGG-T--T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5085 CATATAGTTGCATATTCAGTAGGGCTCATAG
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5116 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
5147 CATATAGTTGCACATTTAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
5178 CATGTAGTTGCATATTTAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
5209 CATGTAGTTGCATATTTAGTAGGGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5240 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5271 CATATAGTTGCATATTCAGTAGAGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5302 CATATAGTTGCATATTCAATAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5328 CATATAGTTGCATATTCAGTAGGGCTCTTAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
5359 CATATAGTTGCATATTCAATAGAGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5390 CATATAGTTGCATATTCAGTAGGGCT--T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5417 -ATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5447 CATATAGTTGCATATTCAGTAGAGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5478 CATATAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5509 CATATAGTTGCATATTCAGTAGGGCTCATA-
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5539 C----AGTTGCATATTCAGTAGGGCTCAT--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5564 -ATA-A-TTGCATATTCAATAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5587 CATATAGTTACATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
5618 CATGTAGTTGCATATTCAGTAGGGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5649 CATATAGTTCCATATTGC-GTAGGGCTCATAC
1 CATATAGTTGCATATT-CAGTAGGGCTCATAC
* *
5680 CATGTAGTTGCATATTCAGTAGGGCTCATAA
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
5711 CATATAGTTGCATATTCAGTAGGG--C-T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5737 CATATAGTTGCATATTCAGTAGGGCTTATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* *
5768 CATATAGTTGCATATTTAGTAGGG-----GC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5794 CATATAGTTGCATATTCAGTAGGGGT--T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
5821 CATATAGTTGCATAGTCTGTAGGGGT--T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
* * *
5848 CATATAGTTGCATAGTCTGTAGGGGT--T--
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5875 CATATAGTTGCATATTCAGTAGGGCTCATCC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5906 CATATAGTTGCATATTCAGTAGGGCTCATGC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5937 GATATAGTTGCATATTCAGTAGGGCTC-TAAC
1 CATATAGTTGCATATTCAGTAGGGCTCAT-AC
*
5968 CATGTAGTTGCATATTCAGTAGGGCTCATAC
1 CATATAGTTGCATATTCAGTAGGGCTCATAC
*
5999 CATGTAGTTGCATA
1 CATATAGTTGCATA
6013 AAACGCATTG
Statistics
Matches: 2498, Mismatches: 157, Indels: 246
0.86 0.05 0.08
Matches are distributed among these distances:
23 2 0.00
24 7 0.00
25 5 0.00
26 616 0.25
27 260 0.10
28 58 0.02
29 24 0.01
30 9 0.00
31 1511 0.60
32 6 0.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (31 bp):
CATATAGTTGCATATTCAGTAGGGCTCATAC
Found at i:6321 original size:2 final size:2
Alignment explanation
Indices: 6314--6339 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6304 CAAGTGTCAA
6314 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6340 GGTATCCGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6322 original size:53 final size:53
Alignment explanation
Indices: 6236--6339 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 53
6226 CCACAAATAG
6236 TTAGAGTAATTTAAGCAAGTGTCAATATAATATATATATATATATATATATAA
1 TTAGAGTAATTTAAGCAAGTGTCAATATAATATATATATATATATATATATAA
6289 TTAGAGTAATTTAAGCAAGTGTCAA-ATATATATATATATATATATATATAT
1 TTAGAGTAATTTAAGCAAGTGTCAATATA-ATATATATATATATATATATAT
6340 GGTATCCGTA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
52 3 0.06
53 47 0.94
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.40
Consensus pattern (53 bp):
TTAGAGTAATTTAAGCAAGTGTCAATATAATATATATATATATATATATATAA
Found at i:9151 original size:331 final size:330
Alignment explanation
Indices: 7678--11016 Score: 2972
Period size: 331 Copynumber: 10.1 Consensus size: 330
7668 CGAAAAAACA
* * ** *
7678 AATGTGGCTAAGATTTCATTAGATGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATG
1 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCATG
* * * * * *
7743 CAAAACTAAGCCGG-GTCCCCGGAATGCGGTTTTAG-CAAAAA-AGTG-T-GATGGTACACGATT
66 CAAAACTGAGCCGGAG--CCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* * * *
7803 TCGAC-AAAATTTTTGCAAAAAATT-AACCAAAA-TATTTCCCT-ACATTTTTAGCCACAATACT
129 TCGGCTAAAA-TTTTGC-AAAAATTGACCCAAAAGAATTTACCTCA-ATTTTTAGCCACAATACT
* * * * * *
7864 CATAAAATATATATAATTCAAAGCCACAAAGATTGAAGGGGTTTTCACGCTTTTAATATCGTGTT
191 CATAAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGT-TT
* * * * * * * * * *
7929 TCCCATTTTTTCTGAATTAAATTCTAACTAAATTGACACAAAGAAT-AGATACTCATAAAAACAA
255 TCCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAAC-ATGATTCAGATGCTCGTAAAAACAA
7993 ATCCTTAAATCC
319 ATCCTTAAATCC
* * *
8005 AATATGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGTGTCAAAAATCATG
1 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCATG
* * * * * * * *
8070 CAAAACTTATCCTGAGCCCCGTAACGTGTTTTTAGTCAAGAACCGTGAT-G-T--TACATGATTT
66 CAAAACTGAGCCGGAG-CCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
* * * * ** * * * * * * *
8131 CTG-TTAAATTTTGCAACAATTTACCTGAAAGAATTTTTCCTTAATCTTTGGCTACGATATTCAT
130 CGGCTAAAATTTTGCAAAAATTGACCCAAAAGAA-TTTACCTCAATTTTTAGCCACAATACTCAT
* * * *
8195 AAAAAAATGTATAATTCAACGCCAAAAATATTGAAAGGCTTTTCACGTTTCAAATATCTGTTTTC
194 -AAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATC-GTTTTC
* * *
8260 CTA-TTTTTCCGAATTAATTTCTAATTAAATCGAAAGATGATTCAGATGCTTGT-AAAACAAATT
257 CTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATC
8323 CTTAAATCC
322 CTTAAATCC
* * *
8332 AATGT-GACTGAGATATCGTTAGATGAATATAGATATTTCAATGAGTCTTTACGCCAAAAATCAT
1 AATGTGGA-TGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCAT
* * * *
8396 TCAAAACTGAGCCGG-GACACCAGAACGCTTTTTTAGCCAAAAATCGTGATGG---GTACACGAT
65 GCAAAACTGAGCCGGAG-C-CCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGAT
* * * * *
8457 TTCGGCTAAATTTTTGTAAAAATTTAACCGAAAG--TTTCACCCTCAATTTTTAGCCACAATACT
128 TTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGAATTT-A-CCTCAATTTTTAGCCACAATACT
* * * * * * *
8520 CATAAAATATCTATAATTCAACGTCAAAAAGATTCAACGGCTTTTCGCGTTTCTAATATCGTTTT
191 CATAAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCG-TTT
* * * ** *
8585 TCCTAATAATTTTTTTCCGAATTAACTTCTAATGAAATCGAAGCAACATTCAGATGCTCGTAAGA
255 TCC---T-A-TTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAA
* * *
8650 ATAAATTCTTAAATCA
315 ACAAATCCTTAAATCC
* ** *
8666 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAAGGAAACTTTGCGCCGAAAATCATG
1 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCATG
* ** * * *
8731 CAAAACTGAGCC-TAGGCCCGGAACGTATTTTTAGCTAAAAATCGTCATGGTTAGTACACGATTT
66 CAAAACTGAGCCGGA-GCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
* *
8795 CGGCTAAAATTTTGCAAAAATTGACCCAAAAGAATTTACCTCAATTTTTATCCACGATACTCATA
130 CGGCTAAAATTTTGCAAAAATTGACCCAAAAGAATTTACCTCAATTTTTAGCCACAATACTCATA
* * * * *
8860 AAAAATATATAATTCAACACCAAAAAGATTGAAAGGCTATTCACGCTTATAATATTGATTTTTCT
195 AAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCG-TTTTCCT
* * * * * *
8925 A-TTTTTCTGTATTAATTTCTTAGTAAACCGAAACATGATTCAGATGCTCGTAAAAGCAAATCCT
259 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCT
*
8989 TAAATCT
324 TAAATCC
* * * * * * * * * * *
8996 AATGTGGGTAATATTTGGTTAGATGGACATAAATGTTTCAATGAGACTTAGCACCAGAAATCATG
1 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCATG
* * *
9061 CAAAACAGAGCCGGAGCTTCGGAACGCGTTTTTAGCCAAAAACCATGATGGTTAGTACACGATTT
66 CAAAACTGAGCCGGAGC-CCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT
* * * * *
9126 CGGTTAAAATTTTGCAAAAATTGACCCAAAA-AATCTCCCATCAATTTTTAGCCACAACAGTCAT
130 CGGCTAAAATTTTGCAAAAATTGACCCAAAAGAATTTACC-TCAATTTTTAGCCACAATACTCAT
* * * * * *
9190 GAAAAATATATAATTCAACGCAAAAAAGATTGAAGGGCTTCTCGTC-CTTCTTATATCGTTTTCC
194 AAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTC-ACGCTTCTAATATCGTTTTCC
* *
9254 AATTTTTTCCGAATTAATTTCTAATTAAATCGAAACCAT-ATTGAGATGCTCGTAAAAACAAATC
258 TATTTTTTCCGAATTAATTTCTAATTAAATCGAAA-CATGATTCAGATGCTCGTAAAAACAAATC
*
9318 ATTAAATCC
322 CTTAAATCC
* * * * * *
9327 AATGCGGCTGAGATTTCGTTAGATGAATATAAATATTTCAATAAGTC-TTGACACCAAAAATCAT
1 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTG-CGCCAAAAATCAT
* * * * *
9391 GCAGAACTGAGCCGGGGACCCGGAACGCATTTTTAG-CAAAAAAC-T-ATGATATAGTACACGAT
65 GCAAAACTGAGCCGGAG-CCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGT-TAGTACACGAT
** * * * **** *
9453 TTCTACTAAATTTTTGC------TAACCGAAATTTTTTTCCCTGC-ATTTTTAGCCACAATACTC
128 TTCGGCTAAAATTTTGCAAAAATTGACCCAAAAGAATTTACCT-CAATTTTTAGCCACAATACTC
* * ** * ** * * *
9511 AT--AATATATATAATTCAAAGGTAAAGAGATTGAAAGATTTTTCAAGCTTTTATTATCGTTTTT
192 ATAAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCG-TTTT
* * * * * * * *
9574 CCTATTTTATCTGAATTAATTTCTAATTAATTCGAGACAAGATT-ACATACTCATAAAAACAAAT
256 CCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAAT
9638 CCTTAAATCC
321 CCTTAAATCC
* * * *
9648 AATATGGATGAGATTT-TTCTAGATGAATATAGATATTTCAAGGACTCTTTGCGCCAAAAATCAT
1 AATGTGGATGAGATTTGGT-TAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCAT
* ** * ** ** * * *
9712 ACAAAACTGAGCATGAGCCCTGTAACATGTTTTTAGTTAAGAACTGTGAT-G-T--TACATGATT
65 GCAAAACTGAGCCGGAGCCC-GGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* ** * * ** * * * *
9773 TCCG-TTCAATTTTGCAAAAATTTA-CTAGAAAGAATTTTTTCTTAATCTTTGGCCACGATACTC
129 TCGGCTAAAATTTTGCAAAAATTGACCCA-AAAGAA-TTTACCTCAATTTTTAGCCACAATACTC
* * * *
9836 GT-AAAAATATATAATTCAACGCCAAAAATATTGAAAGGCTTTTCATGCTTCAAATATCTGTTTT
192 ATAAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATC-GTTTT
* *
9900 CCTATTTTTTCCGAATTAATTTCTAATTAAATCGAGAGATGATTCAGATGCTCGT-AAAACAAAT
256 CCTATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAAT
* *
9964 CATAAAATCC
321 CCTTAAATCC
* * * * * *
9974 AATGTGGCTGATATTTCGTTAGATAAATATAGATATTTCAATGAGTC-TTGCCACCAAAATTCAT
1 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTG-CGCCAAAAATCAT
* * * * * * * * * *
10038 TCAAGACTGAGCCGGGACCCCAGAACGCATTTTTGGCCAAAAATCGTGATAGTTAGTAGATGATT
65 GCAAAACTGAGCC-GGAGCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* * * * *
10103 TCGGCTAAATTTTTGAAAAAACTT-AACCGAAAG--TTTCACCCTCAATTTTTAGCCACATTACT
129 TCGGCTAAAATTTTGCAAAAA-TTGACCCAAAAGAATTT-A-CCTCAATTTTTAGCCACAATACT
* * * * * * * *
10165 CATAAAATATCTATAATTCAACGTCAAAATGATTCAACGGCTTTTCACGTTTCTATTATCGTTTT
191 CATAAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCG--TT
* * * **
10230 TTCTATTAATTTTTTTCTGAATTAATTT-TAATGAAATCGAAACAACATTCAGATGCTCGTAAAA
254 TTC--CT-A-TTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAA
* *
10294 ACAAATTCTTAAATCA
315 ACAAATCCTTAAATCC
* * * *
10310 AATGTGGATGACATTTGGTTAGATGAATAGAGATATTTCAAGGAGTCTTTGCGCCGAAAATCATG
1 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCATG
* * *
10375 CAAAACTAAGCCTGG-GCCCGGAA--CGTATTTTAGCTAAAAATCGTGATGGTTAGTACACGATT
66 CAAAACTGAGCC-GGAGCCCGGAACGCGT-TTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* * *
10437 TCGGCTAAATTTTTGCAAAAATTGACCCAAAAGAATTTACCTCAATTTTTGGCCACGATACTCAT
129 TCGGCTAAAATTTTGCAAAAATTGACCCAAAAGAATTTACCTCAATTTTTAGCCACAATACTCAT
* * * * *
10502 AAAAAATATATAATTCAACACAAAAAAGATTGAAAGGCTATTCACGCTTCTAATATTCATTTTTC
194 AAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATA-TCGTTTTCC
* * * *
10567 TA-TTTTTCTGAATTAATTTCTTATTAAATCGAAACATGGTTCAGATGCTCGTAAAAACAAATTC
258 TATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCC
10631 TTAAA-CC
323 TTAAATCC
* * * ** * * *
10638 TAATGTGGGTAAGATTTGGTTAGATGGACCTAGATATTTCAATGAGACTTGGCACCAAAAATCAT
1 -AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCAT
* * * ** *
10703 GCAAAACAGAGTCGGAGCTTCGGAACGCGTTTTTAGCCAAAAACTTTGATGGTTAGTACTCGATT
65 GCAAAACTGAGCCGGAGC-CCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
* * ** *
10768 TCGGTTAAAATTTTGCAAAAATTGACTCAAAA-AATTCCCCTCAATTTTTCGCCACAATACTCAT
129 TCGGCTAAAATTTTGCAAAAATTGACCCAAAAGAATTTACCTCAATTTTTAGCCACAATACTCAT
* * * * * * * * *
10832 AAAAAATATATAATTCAATGCTAAAAAGATCGAAGGGCTTATCGCCCTTCTTATATCATTTTCCT
194 AAAAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTCCT
* ** *
10897 ATTTTATCCGAATTAATTTCTAATTAAATCGAAACCGGATGT-AGATGCTCGTAAAAACAAATCA
259 ATTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGAT-TCAGATGCTCGTAAAAACAAATCC
10961 TTAAATCC
323 TTAAATCC
* * * * *
10969 AATGTGGCTGAAATTTCGATAGATGAATTTAGATATTTCAATGAGTCT
1 AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCT
11017 AGACGCCCTG
Statistics
Matches: 2420, Mismatches: 490, Indels: 201
0.78 0.16 0.06
Matches are distributed among these distances:
318 8 0.00
319 10 0.00
320 4 0.00
321 142 0.06
322 46 0.02
323 30 0.01
324 12 0.00
325 31 0.01
326 199 0.08
327 279 0.12
328 122 0.05
329 223 0.09
330 352 0.15
331 398 0.16
332 17 0.01
333 80 0.03
334 208 0.09
335 40 0.02
336 212 0.09
337 4 0.00
338 3 0.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (330 bp):
AATGTGGATGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTTGCGCCAAAAATCATG
CAAAACTGAGCCGGAGCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTC
GGCTAAAATTTTGCAAAAATTGACCCAAAAGAATTTACCTCAATTTTTAGCCACAATACTCATAA
AAAATATATAATTCAACGCCAAAAAGATTGAAAGGCTTTTCACGCTTCTAATATCGTTTTCCTAT
TTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTCAGATGCTCGTAAAAACAAATCCTTA
AATCC
Found at i:10245 original size:14 final size:15
Alignment explanation
Indices: 10226--10258 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
10216 TCTATTATCG
10226 TTTTTTCT-ATTAAT
1 TTTTTTCTAATTAAT
10240 TTTTTTCTGAATTAAT
1 TTTTTTCT-AATTAAT
10256 TTT
1 TTT
10259 AATGAAATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
16 9 0.53
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.70
Consensus pattern (15 bp):
TTTTTTCTAATTAAT
Found at i:11636 original size:27 final size:27
Alignment explanation
Indices: 11572--11637 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
11562 AAAAATACAC
*
11572 AAAATTATATTTTAATAATTGCATAGTT
1 AAAA-TATATTTTAATAATGGCATAGTT
* * *
11600 AAATTTTATTTTAATAATGGCA-ATTT
1 AAAATATATTTTAATAATGGCATAGTT
11626 AGAAATATATTT
1 A-AAATATATTT
11638 GAAAAAAATG
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 4 0.13
27 24 0.77
28 3 0.10
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (27 bp):
AAAATATATTTTAATAATGGCATAGTT
Found at i:11725 original size:96 final size:96
Alignment explanation
Indices: 11560--11741 Score: 276
Period size: 96 Copynumber: 1.9 Consensus size: 96
11550 AAATATATTT
** * * *
11560 GAAAAAATACACAAAATTATATTTTAATAATTGCATAGTTAAATTTTATTTTAATAATGGCAATT
1 GAAAAAATACACAAAATTATATTTTAATAATAACATAATTAAA-TATATTTTAATAATGACAATT
11625 TAGAAATATATTTGAAAAAAATGGTATAATCA
65 TAGAAATATATTTGAAAAAAATGGTATAATCA
* *
11657 GAAAAAATACATAAAATTATATTTTTAATAATAATATAATTAAA-ATATTTTAATAATGACAATT
1 GAAAAAATACACAAAATTATA-TTTTAATAATAACATAATTAAATATATTTTAATAATGACAATT
11721 TAGAAATATATTTGAAAAAAA
65 TAGAAATATATTTGAAAAAAA
11742 AATATAATTA
Statistics
Matches: 77, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
96 39 0.51
97 20 0.26
98 18 0.23
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (96 bp):
GAAAAAATACACAAAATTATATTTTAATAATAACATAATTAAATATATTTTAATAATGACAATTT
AGAAATATATTTGAAAAAAATGGTATAATCA
Found at i:14221 original size:31 final size:31
Alignment explanation
Indices: 14186--14344 Score: 107
Period size: 31 Copynumber: 5.3 Consensus size: 31
14176 TAATTACTCG
*
14186 AATAAGGGTTTAATGTTTGTCAAAATGCTCA
1 AATAAGGGTCTAATGTTTGTCAAAATGCTCA
* * * *
14217 AATAAAGGCCTGAT-TTT-T-AAATTTGGC-CA
1 AATAAGGGTCTAATGTTTGTCAAA-AT-GCTCA
* **
14246 AATAAAGACCTAATGTTTGTCAAAATGCTCA
1 AATAAGGGTCTAATGTTTGTCAAAATGCTCA
* * **
14277 AATAAGGGTCTGATCTTT-T-AATTTAGC-CA
1 AATAAGGGTCTAATGTTTGTCAAAAT-GCTCA
* * *
14306 AATAAGGGTCTAAAGTTTGCCAAAATACTCA
1 AATAAGGGTCTAATGTTTGTCAAAATGCTCA
14337 AATAAGGG
1 AATAAGGG
14345 CCCGGCGTCG
Statistics
Matches: 96, Mismatches: 22, Indels: 20
0.70 0.16 0.14
Matches are distributed among these distances:
28 3 0.03
29 36 0.38
30 14 0.15
31 40 0.42
32 3 0.03
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (31 bp):
AATAAGGGTCTAATGTTTGTCAAAATGCTCA
Found at i:14279 original size:60 final size:60
Alignment explanation
Indices: 14196--14346 Score: 205
Period size: 60 Copynumber: 2.5 Consensus size: 60
14186 AATAAGGGTT
* *
14196 TAATGTTTGTCAAAATGCTCAAATAAAGGCCTGAT-TTTTAAATTTGGCCAAATAAAGACC
1 TAATGTTTGTCAAAATGCTCAAATAAGGGCCTGATCTTTT-AATTTAGCCAAATAAAGACC
* * **
14256 TAATGTTTGTCAAAATGCTCAAATAAGGGTCTGATCTTTTAATTTAGCCAAATAAGGGTC
1 TAATGTTTGTCAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTAGCCAAATAAAGACC
* * *
14316 TAAAGTTTGCCAAAATACTCAAATAAGGGCC
1 TAATGTTTGTCAAAATGCTCAAATAAGGGCC
14347 CGGCGTCGAA
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
60 76 0.95
61 4 0.05
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (60 bp):
TAATGTTTGTCAAAATGCTCAAATAAGGGCCTGATCTTTTAATTTAGCCAAATAAAGACC
Found at i:14426 original size:31 final size:31
Alignment explanation
Indices: 14391--14490 Score: 105
Period size: 31 Copynumber: 3.3 Consensus size: 31
14381 ATGCCAGACC
*
14391 CTTATTTGAGCATTTTTGATAATATTAGGCT
1 CTTATTTGAGCATTTTTGATAACATTAGGCT
* ** * * **
14422 CTTATTTGACCA-AATT-AAAAGATCGGGCT
1 CTTATTTGAGCATTTTTGATAACATTAGGCT
*
14451 CTTATTTGAGCATTTTTGATAACGTTAGGCT
1 CTTATTTGAGCATTTTTGATAACATTAGGCT
14482 CTTATTTGA
1 CTTATTTGA
14491 CCAAATTAAA
Statistics
Matches: 52, Mismatches: 15, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
29 20 0.38
30 4 0.08
31 28 0.54
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (31 bp):
CTTATTTGAGCATTTTTGATAACATTAGGCT
Found at i:14455 original size:29 final size:29
Alignment explanation
Indices: 14418--14517 Score: 103
Period size: 29 Copynumber: 3.4 Consensus size: 29
14408 GATAATATTA
*
14418 GGCTCTTATTTGACCAAATTAAAAGATCG
1 GGCTCTTATTTGACCAAATTAAAAGATTG
* ** * *
14447 GGCTCTTATTTGAGCATTTTTGATAACG-TTA
1 GGCTCTTATTTGACCA-AATT-A-AAAGATTG
14478 GGCTCTTATTTGACCAAATTAAAAGATTG
1 GGCTCTTATTTGACCAAATTAAAAGATTG
*
14507 GGCCCTTATTT
1 GGCTCTTATTT
14518 AAGCATTTAG
Statistics
Matches: 55, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
28 3 0.05
29 28 0.51
30 4 0.07
31 17 0.31
32 3 0.05
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (29 bp):
GGCTCTTATTTGACCAAATTAAAAGATTG
Found at i:14484 original size:60 final size:60
Alignment explanation
Indices: 14389--14525 Score: 229
Period size: 60 Copynumber: 2.3 Consensus size: 60
14379 TGATGCCAGA
*
14389 CCCTTATTTGAGCATTTTTGATAATATTAGGCTCTTATTTGACCAAATTAAAAGATCGGG
1 CCCTTATTTGAGCATTTTTGATAACATTAGGCTCTTATTTGACCAAATTAAAAGATCGGG
* * *
14449 CTCTTATTTGAGCATTTTTGATAACGTTAGGCTCTTATTTGACCAAATTAAAAGATTGGG
1 CCCTTATTTGAGCATTTTTGATAACATTAGGCTCTTATTTGACCAAATTAAAAGATCGGG
*
14509 CCCTTATTTAAGCATTT
1 CCCTTATTTGAGCATTT
14526 AGGCCCTTAT
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 71 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (60 bp):
CCCTTATTTGAGCATTTTTGATAACATTAGGCTCTTATTTGACCAAATTAAAAGATCGGG
Found at i:14530 original size:20 final size:20
Alignment explanation
Indices: 14507--14547 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14497 TAAAAGATTG
*
14507 GGCCCTTATTTAAGCATTTA
1 GGCCCTTATTTAAGCAATTA
*
14527 GGCCCTTATTTGAGCAATTA
1 GGCCCTTATTTAAGCAATTA
14547 G
1 G
14548 CCAATTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (20 bp):
GGCCCTTATTTAAGCAATTA
Found at i:16204 original size:108 final size:108
Alignment explanation
Indices: 16015--16232 Score: 436
Period size: 108 Copynumber: 2.0 Consensus size: 108
16005 ATAGTTCAAT
16015 TTCTTTTATATTCAATCAGGTGGATTTCGACCTTGTCAATGCCCTGTTCAATTGTTGCTGCTCTA
1 TTCTTTTATATTCAATCAGGTGGATTTCGACCTTGTCAATGCCCTGTTCAATTGTTGCTGCTCTA
16080 ATTAATTCATCATTGGCTAATGGCTTCCTATGTATCTTGTAGC
66 ATTAATTCATCATTGGCTAATGGCTTCCTATGTATCTTGTAGC
16123 TTCTTTTATATTCAATCAGGTGGATTTCGACCTTGTCAATGCCCTGTTCAATTGTTGCTGCTCTA
1 TTCTTTTATATTCAATCAGGTGGATTTCGACCTTGTCAATGCCCTGTTCAATTGTTGCTGCTCTA
16188 ATTAATTCATCATTGGCTAATGGCTTCCTATGTATCTTGTAGC
66 ATTAATTCATCATTGGCTAATGGCTTCCTATGTATCTTGTAGC
16231 TT
1 TT
16233 TCTTATTTTT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 110 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (108 bp):
TTCTTTTATATTCAATCAGGTGGATTTCGACCTTGTCAATGCCCTGTTCAATTGTTGCTGCTCTA
ATTAATTCATCATTGGCTAATGGCTTCCTATGTATCTTGTAGC
Found at i:18915 original size:196 final size:196
Alignment explanation
Indices: 18561--18955 Score: 637
Period size: 196 Copynumber: 2.0 Consensus size: 196
18551 ATCCTCTCAC
* * * *
18561 TTACTTAAGGATTCTTTACTGACTTGACCGTTAGAGTGTTAACGCGGGATTCCATCCCCGCACTC
1 TTACTTAAGGATCCTTCACTGACTTGACCGTCAGAGTGCTAACGCGGGATTCCATCCCCGCACTC
* * *
18626 CTAGGTTTTCTTCTACTCGCAGGTCGTCAACCTTCCATGTCTCAGAGGCTCAAAGCGACGGTCTT
66 CTAGGTGTTCTTCTACCCGCAGGTCGTCAACCTTCCAAGTCTCAGAGGCTCAAAGCGACGGTCTT
* * *
18691 CGTCGGCCATCCTTGTTGATTGTTTTACCCTCAACATAACCAAATCACGCTAAGTAAGAAAAATA
131 CATCGGCCATCCTTGTTGATTATTTTACCCTCAACATAACCAAATCACGCTAAGTAAAAAAAATA
18756 G
196 G
* * *
18757 TTACTTGAGGATCCTTCACTGACTTGACCGTCGGAGTGCTAACGCGGGATTCCATCCTCGCACTC
1 TTACTTAAGGATCCTTCACTGACTTGACCGTCAGAGTGCTAACGCGGGATTCCATCCCCGCACTC
* * *
18822 CTAGGTGTTCTTTTACCCGTAGGTCGTCAACCTTCCAAGTCTCAGAGGCTCAGAGCGACGGTCTT
66 CTAGGTGTTCTTCTACCCGCAGGTCGTCAACCTTCCAAGTCTCAGAGGCTCAAAGCGACGGTCTT
*
18887 CATCGGCCGTCCTTGTTGATTATTTTACCCTCAACATAACCAAATCACGCTAAGTAAAAAAAATA
131 CATCGGCCATCCTTGTTGATTATTTTACCCTCAACATAACCAAATCACGCTAAGTAAAAAAAATA
18952 G
196 G
18953 TTA
1 TTA
18956 TTTCACTATT
Statistics
Matches: 182, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
196 182 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (196 bp):
TTACTTAAGGATCCTTCACTGACTTGACCGTCAGAGTGCTAACGCGGGATTCCATCCCCGCACTC
CTAGGTGTTCTTCTACCCGCAGGTCGTCAACCTTCCAAGTCTCAGAGGCTCAAAGCGACGGTCTT
CATCGGCCATCCTTGTTGATTATTTTACCCTCAACATAACCAAATCACGCTAAGTAAAAAAAATA
G
Found at i:21560 original size:8 final size:8
Alignment explanation
Indices: 21547--21591 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
21537 TTTTTGTACA
21547 ATCTTACT
1 ATCTTACT
21555 ATCTTACT
1 ATCTTACT
*
21563 ATCTTATT
1 ATCTTACT
**
21571 A-CTTTTT
1 ATCTTACT
21578 ATCTTACT
1 ATCTTACT
21586 ATCTTA
1 ATCTTA
21592 TTATTATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 6 0.19
8 26 0.81
ACGTcount: A:0.24, C:0.20, G:0.00, T:0.56
Consensus pattern (8 bp):
ATCTTACT
Found at i:21733 original size:28 final size:28
Alignment explanation
Indices: 21684--21738 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
21674 TTTTAATAAA
*
21684 TATTCTTTTTAGTCATTTAACTTTTTTT
1 TATTCTTTTTAGTCATTCAACTTTTTTT
*
21712 TATT-TTTTTAGATGATTCAACTTTTTT
1 TATTCTTTTTAG-TCATTCAACTTTTTT
21739 ATTGATTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.20, C:0.09, G:0.05, T:0.65
Consensus pattern (28 bp):
TATTCTTTTTAGTCATTCAACTTTTTTT
Found at i:22561 original size:2 final size:2
Alignment explanation
Indices: 22554--22589 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
22544 GCTACTTGAA
22554 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22590 TCATCTAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24240 original size:637 final size:631
Alignment explanation
Indices: 23041--24214 Score: 1397
Period size: 637 Copynumber: 1.8 Consensus size: 631
23031 AGGCCTCCAC
* * * *
23041 TCAGTTTTGCATGGTTTTCGGCATACAGAATCCTTGAAAAATCTATACTAATGTAACCAAATCTC
1 TCAGTTTTGCATGGTTTTC-GCAGAAAGAATCCATGAAAAATCTATACTAATCTAACCAAATCTC
* * *
23106 ATCCACATTGAATTTAAAGATTTGTTTTTACGAGCATCTAAATCTTGTTTTGATTTTATTAAAAA
65 AGCCACATTGAATTCAAAGATTTGTTTTTACGAGCATCTAAATCTTGTTTTGATTTAATTAAAAA
* * **
23171 TAAGTTCAGGAAAAAAAAAACGATATTAAAGGTGTGAAAACCCCTTCAAATTTTTTGGCGTGGAA
130 TAAATTCAGGAAAAAAAAAACGATATTAAAGGCGTGAAAAAACCTTCAAATTTTTTGGCGTGGAA
* *
23236 TTATATATATATTTTCTGAGTATTGAGACAAAAAATTGAGGAAAAACTTTTCGGGTTAGTTCTTT
195 TTATATATATATTTTCTGAGTATTGAGACAAAAAATTGAGG---AACTTTTCGGGTCA--TATTT
* * * * *
23301 TACAAAATTTTAGCCGAAATCGTGTACTAACCCATCACGGTTTTTGGCTAAAAACGCGTTCAGAG
255 TACAAAATTTTAACAGAAATCATGCACTAACCCATCACGGTTTTTGGCTAAAAACACGTTCAGAG
* * * **
23366 TCTCGGCTCAATTTTACATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACC
320 TCCCAGCCCAATTTTACATGATTTTAAGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACC
* **
23431 AAATCTCAGCCACATTGGATTTAAAGATTTGTTTTTATGAGCTTCTGAATTTTGTTTCGATTTAA
385 AAATCTCAGCCACATTGGATTTAAAGATTTGTTTTTATGAGCATCTGAATACTGTTTCGATTTAA
* * * * * *
23496 TTAGAAATTAATTTGGAAAAAAATGTAAAACCGATATTAGAAGCCCGAAAAAGCCCGTCAATCTT
450 TTAGAAATAAATTGGGAAAAAAAAGGAAAAACGATATTAGAAGCCCGAAAAAGCCCATCAATCTT
*
23561 TTTGACGTTGAATTATATTGTGGCAAAAAATTGAGAAAAAATTTTTCGGGTTAGTTTTTAACTGA
515 TTTGACGTTAAATTATATTGTGGCAAAAAATTGAGAAAAAATTTTTCGGGTTAGTTTTTAACTGA
23626 AATCGTGTACACGTTATGGTTTTTGGCTAAAAACGCGTTTCGCGACCCCGGT
580 AATCGTGTACACGTTATGGTTTTTGGCTAAAAACGCGTTTCGCGACCCCGGT
* * *
23678 TCAGTTTTGCATGATGTTTT-GCAGAAAGAATCCATGAAATATCTATATTCATCTAACCAAATCT
1 TCAGTTTTGCATG--GTTTTCGCAGAAAGAATCCATGAAAAATCTATACTAATCTAACCAAATCT
* ** * * * *
23742 CAGCTACATTGAATTCATGGATTTGTTTTTATGAGCGTCTAAATTTTGTTTTGATTTAATTATAA
64 CAGCCACATTGAATTCAAAGATTTGTTTTTACGAGCATCTAAATCTTGTTTTGATTTAATTAAAA
* ** *
23807 ATAAATTC-GGAAAAATGGAAAAATGATATTAGAA-GCGTGAAAAAATTTTCAAATTTTTTGTCG
129 ATAAATTCAGGAAAAA---AAAAACGATATTA-AAGGCGTGAAAAAACCTTCAAATTTTTTGGCG
* * * * ** *
23870 TTGAGTTATATAT-T-TTTTCTGAGTTTTGTGGTAAAAAATTGAGG-A-TTTTCGTGTCA-ATTT
190 TGGAATTATATATATATTTTCTGAGTATTGAGACAAAAAATTGAGGAACTTTTCGGGTCATATTT
* * *
23930 TACGAAATTTTAACAGAAATCATGCACTAA-CCATCACAGTTTTTTTTTTTTGCTAAAAACACGT
255 TACAAAATTTTAACAGAAATCATGCACTAACCCATCAC-G-----GTTTTTGGCTAAAAACACG-
* * * *
23994 TTCGGAGTCCCAGCCCAGTTTTGCGTGATTTTAAGCAG-AAAGACT-CTTAGAAATATCTATATT
313 TTCAGAGTCCCAGCCCAATTTTACATGATTTTAAGC-GCAAAGACTCCTT-GAAATATCTATATT
* ** *
24057 CATCTAATTAAATCTCAGCCACGTTGGATTTAATA-ATTTGTTTTTACT-AGCATCTGAATACTG
376 CATCGAACCAAATCTCAGCCACATTGGATTTAA-AGATTTGTTTTTA-TGAGCATCTGAATACTG
**
24120 TTTCGATTTAATTAGAAATAAATTCGGAGAAAAAAAAGGAAAAACGATATTAGAAGCGTG-AAAA
439 TTTCGATTTAATTAGAAATAAATT-GG-GAAAAAAAAGGAAAAACGATATTAGAAGCCCGAAAAA
* *
24184 -CCCATCAATTTTTTTGGCGTTAAATTATATT
502 GCCCATCAATCTTTTTGACGTTAAATTATATT
24215 TTTTCTGAGT
Statistics
Matches: 449, Mismatches: 69, Indels: 40
0.80 0.12 0.07
Matches are distributed among these distances:
628 7 0.02
629 29 0.06
632 9 0.02
633 1 0.00
634 19 0.04
635 150 0.33
636 15 0.03
637 165 0.37
638 1 0.00
639 51 0.11
640 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (631 bp):
TCAGTTTTGCATGGTTTTCGCAGAAAGAATCCATGAAAAATCTATACTAATCTAACCAAATCTCA
GCCACATTGAATTCAAAGATTTGTTTTTACGAGCATCTAAATCTTGTTTTGATTTAATTAAAAAT
AAATTCAGGAAAAAAAAAACGATATTAAAGGCGTGAAAAAACCTTCAAATTTTTTGGCGTGGAAT
TATATATATATTTTCTGAGTATTGAGACAAAAAATTGAGGAACTTTTCGGGTCATATTTTACAAA
ATTTTAACAGAAATCATGCACTAACCCATCACGGTTTTTGGCTAAAAACACGTTCAGAGTCCCAG
CCCAATTTTACATGATTTTAAGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCT
CAGCCACATTGGATTTAAAGATTTGTTTTTATGAGCATCTGAATACTGTTTCGATTTAATTAGAA
ATAAATTGGGAAAAAAAAGGAAAAACGATATTAGAAGCCCGAAAAAGCCCATCAATCTTTTTGAC
GTTAAATTATATTGTGGCAAAAAATTGAGAAAAAATTTTTCGGGTTAGTTTTTAACTGAAATCGT
GTACACGTTATGGTTTTTGGCTAAAAACGCGTTTCGCGACCCCGGT
Found at i:24429 original size:331 final size:321
Alignment explanation
Indices: 23643--24544 Score: 899
Period size: 331 Copynumber: 2.7 Consensus size: 321
23633 TACACGTTAT
* * *
23643 GGTTTTTGGCTAAAAACGCGTTTCGCGA-CCCCGGTTCAGTTTTGCATGATGTTTTGCAGAAAGA
1 GGTTTTTGGCTAAAAACGCGTTTCG-GAGTCCCGGCTCAGTTTTGCAGGAT-TTTTGCAGAAAGA
* * * *
23707 ATCCA-TGAAATATCTATATTCATCTAACCAAATCTCAGCTACATTGAATTCATGGATTTGTTTT
64 CT-CATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATT-AAGGATTTGTTTT
* * * * *
23771 TATGAGCGTCTAAATTTTGTTTTGATTTAATTATAAATAAATTCG-G--AAAAATGGAAAAATGA
127 TAT-AGCATCTGAA-TCTGTTTTGATTTAATTAGAAATAAATTCGAGAAAAAAATGGAAAAACGA
**** * * ** * *
23833 TATTAGAAGCGTGAAAAAATTTTCAAATTTTTTGTCGTTGAGTTATATATTTTTTCTGAGTTTTG
190 TATTAGAAGCGTG-AAAACCCATCAATTTTTTTGGCGTT-AAAT-TATATTTTTTCTGAGTATTC
* * * *
23898 TGGTAAAAAATTGAGGATTTTCGTGTCAATTTTACGAAATTTTAACAGAAATCATGCACTAACCA
252 TGGCAAAAAATTGAGGATTTTCGGGTCAATTTTACAAAAATTTAACAGAAATCATGCACTAACCA
23963 TCACA
317 TCACA
* * * * * *
23968 GTTTTTTTTTTTTGCTAAAAACACGTTTCGGAGTCCCAGCCCAGTTTTGC-GTGATTTTAAGCAG
1 G-----GTTTTTGGCTAAAAACGCGTTTCGGAGTCCCGGCTCAGTTTTGCAG-GATTTT-TGCAG
** * **
24032 AAAGACTC-TTAGAAATATCTATATTCATCTAATTAAATCTCAGCCACGTTGGATTTAATAATTT
59 AAAGACTCATT-GAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGA-TTAAGGATTT
* *
24096 GTTTTTACTAGCATCTGAATACTGTTTCGATTTAATTAGAAATAAATTCGGAGAAAAAAAAGGAA
122 GTTTTTA-TAGCATCTGAAT-CTGTTTTGATTTAATTAGAAATAAATTC-GAGAAAAAAATGGAA
24161 AAACGATATTAGAAGCGTGAAAACCCATCAATTTTTTTGGCGTTAAATTATATTTTTTCTGAGTA
184 AAACGATATTAGAAGCGTGAAAACCCATCAATTTTTTTGGCGTTAAATTATATTTTTTCTGAGTA
* *
24226 TTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTAGCAAAAATTTAGCCA-AAATCGT
249 TTCTGGCAAAAAATTGAGG----A-TTTTCGGGTCAATTTTA-CAAAAATTTA-ACAGAAATCAT
*
24290 GTACTAACCATCAC-
307 GCACTAACCATCACA
* * * * *
24304 GGTTTTTGGCTAAAAACGCATTCCGGAGTGCCGGCTCAATTTTGCAGGATTTTTGGCACAAAGAC
1 GGTTTTTGGCTAAAAACGCGTTTCGGAGTCCCGGCTCAGTTTTGCAGGATTTTT-GCAGAAAGAC
* * *
24369 TCATTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGATATAAGGATTTGTTTTTA
65 TCATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGAT-TAAGGATTTGTTTTTA
* *
24434 TTAGCATCTCG-ATCTTGTTTTGATTTAATTAGAAATTAATT-GATGAAACAAATGGAAAAACGA
129 -TAGCATCT-GAATC-TGTTTTGATTTAATTAGAAATAAATTCGA-GAAAAAAATGGAAAAACGA
* * * * *
24497 TATTAGAAGGGTGAAAACCCCGTCAATCTTTTTGGCATTGAATTATAT
190 TATTAGAAGCGTGAAAA-CCCATCAATTTTTTTGGCGTTAAATTATAT
24545 ATCTTTTTTA
Statistics
Matches: 474, Mismatches: 71, Indels: 58
0.79 0.12 0.10
Matches are distributed among these distances:
325 1 0.00
329 10 0.02
330 164 0.35
331 199 0.42
332 7 0.01
333 19 0.04
334 27 0.06
335 1 0.00
336 17 0.04
337 27 0.06
338 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (321 bp):
GGTTTTTGGCTAAAAACGCGTTTCGGAGTCCCGGCTCAGTTTTGCAGGATTTTTGCAGAAAGACT
CATTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTAAGGATTTGTTTTTATA
GCATCTGAATCTGTTTTGATTTAATTAGAAATAAATTCGAGAAAAAAATGGAAAAACGATATTAG
AAGCGTGAAAACCCATCAATTTTTTTGGCGTTAAATTATATTTTTTCTGAGTATTCTGGCAAAAA
ATTGAGGATTTTCGGGTCAATTTTACAAAAATTTAACAGAAATCATGCACTAACCATCACA
Found at i:26244 original size:17 final size:17
Alignment explanation
Indices: 26198--26244 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
26188 ACCACCCCCG
*
26198 GATCACTAGTGATGCAA
1 GATCACCAGTGATGCAA
*
26215 GATCACCAATGATGCAA
1 GATCACCAGTGATGCAA
*
26232 GATCACCGGTGAT
1 GATCACCAGTGAT
26245 CAAAGATTAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (17 bp):
GATCACCAGTGATGCAA
Found at i:27281 original size:360 final size:358
Alignment explanation
Indices: 26621--27326 Score: 963
Period size: 360 Copynumber: 2.0 Consensus size: 358
26611 AGTTATTAGC
* * * *
26621 CGAAATCGTGTACTAACCATCACGATTTTTGACTAAAAACGTGTTTCGGATCCCGACTCAGTTTT
1 CGAAATCGTGCACTAACCATCACGATTTTTGACAAAAAACGTGTTCCGGATCCCGACTCAATTTT
* * **
26686 AATTGATTTTTGGAAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTTTGCCACAG
66 AATTGATTTTTGGAAGAAAAACTCCTTGAAATATCTATATTCATCAAACAAAATCTCAGCCACAG
* *
26751 TGGATTTAAGAATTTGTTTTTACGAGCATCTCAATCTTTGTTTCGATTTAATTAGAAATAAATTC
131 TGGATTTAAGAATTTGTTTTTACGAGCATCTCAATCATTGTTTCAATTTAATTAGAAATAAATTC
* *
26816 TGAAAAAAAAAAAAAAACAATATTACAAACGTGAAAAACCCTTCAATATTTTTGATGTTAAATTA
196 GGAAAAAAAAAAAAAAACAATATTACAAACGTGAAAAACCCTTCAATATTTTTGACGTTAAATTA
* * *
26881 TATATTTTTTATGAGTATTATGGCAAAAAAATTTAGGAAAAACTGTTCGTGTCAGTTTTTGCAAA
261 TATATTTTTTATGAGTATTATGGCAAAAAAATTGAGG-AAAACTGTTCGGGTCAATTTTTGCAAA
26946 ATTTTAGCCGAAATCGTGTACTTTTTTTTGTCAA
325 ATTTTAGCCGAAATCGTGTACTTTTTTTTGTCAA
* * * *
26980 CGAAATCGTGCACTAACTATCACGGTTTTTGGCAAAAAAC-TCGTTCCGGACTCCCGGCTCAATT
1 CGAAATCGTGCACTAACCATCACGATTTTTGACAAAAAACGT-GTTCCGGA-TCCCGACTCAATT
* * **
27044 TTGCA-TGATTTTTGGCAGAAAAACTCCTTGAAATATCTATATTCATCAAATTAAATCTCAGCCA
64 TT-AATTGATTTTTGGAAGAAAAACTCCTTGAAATATCTATATTCATCAAACAAAATCTCAGCCA
* *
27108 CATTGGATTTAAGAATTTGTTTTTACGAGCATCTGAAT-ATTGTTTCAATTTAATTAGAAATAAA
128 CAGTGGATTTAAGAATTTGTTTTTACGAGCATCTCAATCATTGTTTCAATTTAATTAGAAATAAA
*** * * ** * * *
27172 TTCGGGAAAAAAATTGGAAAAACGATATTAGAAGTGTGAAAAAATCCTTCAATTTTTTTGGCGTT
193 TTC-GGAAAAAAA-AAAAAAAACAATATTACAAACGTG-AAAAACCCTTCAATATTTTTGACGTT
* * * *
27237 GAATTATATA-TTTTTCTGAGTATTCTGGC-AAAAAATTGAGGAAAACTTTTCGGGTCAATTTTT
255 AAATTATATATTTTTTATGAGTATTATGGCAAAAAAATTGAGGAAAACTGTTCGGGTCAATTTTT
27300 GCAAAATTTTAGCCGAAATCGTGTACT
320 GCAAAATTTTAGCCGAAATCGTGTACT
27327 AACCATCACG
Statistics
Matches: 302, Mismatches: 39, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
358 1 0.00
359 115 0.38
360 120 0.40
361 35 0.12
362 31 0.10
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (358 bp):
CGAAATCGTGCACTAACCATCACGATTTTTGACAAAAAACGTGTTCCGGATCCCGACTCAATTTT
AATTGATTTTTGGAAGAAAAACTCCTTGAAATATCTATATTCATCAAACAAAATCTCAGCCACAG
TGGATTTAAGAATTTGTTTTTACGAGCATCTCAATCATTGTTTCAATTTAATTAGAAATAAATTC
GGAAAAAAAAAAAAAAACAATATTACAAACGTGAAAAACCCTTCAATATTTTTGACGTTAAATTA
TATATTTTTTATGAGTATTATGGCAAAAAAATTGAGGAAAACTGTTCGGGTCAATTTTTGCAAAA
TTTTAGCCGAAATCGTGTACTTTTTTTTGTCAA
Found at i:33058 original size:654 final size:653
Alignment explanation
Indices: 27358--34517 Score: 8518
Period size: 653 Copynumber: 10.9 Consensus size: 653
27348 AAAACGCGTT
*
27358 GATTTTTGACACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
*
27423 TATAAGGA-TT-TTTTTATTAGAATCTCGATCTTGTTTTGATTTAATTAGAAATTAATTCTGAAA
66 TATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAATTCTGAAA
* * ** *
27486 CAAATGGAAAAACGATATTAGAAGGGTGAAAAGCACGTCAATCTCTTTGAAATTGAATTAAATAT
131 CAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATAT
* * *
27551 TTTTTCTAAATATTTCGTAAACAATTGAGAAAAAAA-TTTCATGACAGTTTTT-GCCGAAATCGT
196 TTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCGAAATCGT
* * *
27614 GTACTAACCATCATGATTTTTGGCTAAAAACGCGTTTCGGATCCCAGCTCAGTTTTAATTGATTT
261 GTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAATGATTT
* * * * *
27679 TTGGAAGAAATACTCCTTAAAATATCTAAATTCATCTAACAAAATCTTAGCCACAATGGATTTAA
326 TTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGATTTAA
**
27744 GAATTTGTTTTTACGAGCATCTCAATCTTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAAA
391 GAATTTGTTTTTACGAGCATCTCAAT-TTTGTTTCGATTTAATTAGAAATAAATTCG----GGAA
* * * *
27809 AGAAAAAAGAAAAACGATATTACAAACGTGAAAAACTCTTCAATTTTTTTGACGTTGAATTATAT
451 A-AAAAAAGGAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATAT
27874 ATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTT
515 ATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTT
* * * *
27939 TATCCGAAATCATG---T---CA-CA--GTTTTTGGCTAAAAATGCGTTCCGGAGTGCCGGCTCA
580 TAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTCCCGGCTCA
*
27995 AATTTGCAG
645 ATTTTGCAG
28004 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAATTGTCAACCA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACC--A----AA-TGTCAACCA
*
28069 CATTGGATATAAGGATTTTTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAAT
59 CATTGGATATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAAT
* * * * * * **
28134 TCTGAAACAATTGGAAAAACGCTATTAGAAGGGTAAAAAGCACGTCAATCTTTTTGACGTACAAT
124 TCTGAAACAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAAT
* *
28199 TATATA-TTTTTCTAAATATTTCGTAAAAATTTGA-AAAAAAA--TTCGTGTCATTTTTTAGCCG
189 TATATATTTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCG
* *
28260 AAATCGTGTACTAATCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCAGCTCAGTTTTAA
254 AAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAA
* * * *
28325 TTGATTTTTGGAAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTTACCCACAATG
319 ATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATG
*
28390 GATTTAAGAATTTGTTTTTATGAGCATCTCAATCTTTGTTTCGATTTAATTAGAAATAAATTC--
384 GATTTAAGAATTTGTTTTTACGAGCATCTCAAT-TTTGTTTCGATTTAATTAGAAATAAATTCGG
* * *
28453 G---AAAAAA--AAAACGATATTACAAACGTGAAAAACCCTTCAATTTTTTT-ACGTTAAATTAT
448 GAAAAAAAAAGGAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTAT
* * * *
28512 ATATTTTTTCTGAGAATTATGGCATAAAATTGAGGAAAAACTTTTAGAGTTAGTTTTTGCAAAAT
513 ATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCG-G---G----T-C--AAT
* * * *
28577 TTTAGCCAAAATCGTGTACTTTTTTTTTTTGCCAACGAAATCGTGTACTAACTATCATGGTTTTT
567 TTTTG-C-AAA------A-------TTTTAG-C--CGAAATCGTGTACTAACCATCACGGTTTTT
* * *
28642 GGCAAAAAAACGCGTTCCGGACTCCCGGCTCAATTTTGCAT
614 GGC-TAAAAACGCGTTCCGGAGTCCCGGCTCAATTTTGCAG
** * **
28683 GATTTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAGCCACATTATA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
** * ** * ** *
28748 TATAAGGATTTGTTTTTACGACCATCTAAATCTCGTTTCAATTTAATTAGAAATTAATTCGGAAA
66 TATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAATTCTG-AA
* * *** *
28813 AAAAATTGGAAAAACAATATTAGAAGCACGAAATGCCCGTCAATC-TTTTGGCATTGAATTATAT
130 ACAAA-TGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
* * * * * *
28877 ATTTTTTCTGAATATTTTGCAAAAAATTGAGAAAAATATTTT-GGGTTAGTTTTTAGCCGAAATC
194 ATTTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCGAAATC
* * *
28941 GTGTACTAAGCATCACGATTTTTAGCTAAAAACGCGTTTCGGATCCCGGCTCAATTTTAAATGAT
259 GTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAATGAT
** * * *
29006 TTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAATTAAATCTCAGCCACATTGAATTC
324 TTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGATTT
* * * *
29071 AAGAATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAATTC-AGAGAAA
389 AAGAATTTGTTTTTACGAGCATCTCAATTTTGTTTCGATTTAATTAGAAATAAATTCGGGAAAAA
* * * *
29135 AAAAGGAAAAACGATATTAGAAGCGTGAAAAATCCTTCAATTATTTTGACGTTGAATTATATATT
454 AAAAGG-AAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATT
* *
29200 TTTTCTGAGTATTCTAGCAAAAAATTGAGG-AAAACTTTTCGGGACAATTTTTGCAAAATTTTAG
518 TTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAG
* * * * *
29264 CCGAAATCGTGTA-TGACCATCACGGTTTTTGGCTAAAAATGCGTTCCAGAGTGCCGGCTCAAAT
583 CCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTCCCGGCTCAATT
29328 TTGCAG
648 TTGCAG
29334 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAATTGTCAACCA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACC--A----AA-TGTCAACCA
*
29399 CATTGGATATAAGGA-TT-TTTTTATTAGCATCTCGATCTTGCTTTGATTTAATTAGAAATTAAT
59 CATTGGATATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAAT
* * * **
29462 TCTGAAACAAATGGAAAAACGATATTAGAAGGGTAAAAAGCACGTCAATCTTTTTGGCGTACAAT
124 TCTGAAACAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAAT
* *
29527 TATATA-TTTTTCTAAATATTTCGTAAAAAATTGA-AAAAAAAATTTCGT-TCATTTTTTAGCCG
189 TATATATTTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCG
*
29589 AAATGGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAA
254 AAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAA
* * ** * * *
29654 ATGATTTTTGGTAGAAAGACTCCTTGGAATATCTATATTCATCTAATTATATCTCAGCCATATTG
319 ATGATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATG
* * * *
29719 GATTTATGAGTTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAATAAATTCGGG
384 GATTTAAGAATTTGTTTTTACGAGCATCTCAATTTTGTTTCGATTTAATTAGAAATAAATTCGGG
* *
29784 --AAAAAAAGGAAAAACGATATTAGAAGCGTGAAAACCCCTTCAATTTTTTTGGCGTTGAATTAT
449 AAAAAAAAAGG-AAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTAT
* *
29847 ATATTTTTTCTGAGTATTCTGGCAAAGAATTAAGGAAAAACTTTTCGGGTCAATTTTTGCAAAAT
513 ATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAAT
* * * *
29912 TTTAACCGAAATTGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGTAGTGCCGGCT
578 TTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTCCCGGCT
*
29977 CAATTTTGTAG
643 CAATTTTGCAG
*
29988 GATTTTTGGCACAAAAACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
* * *
30053 TATAAGGATTTGTTCTTATTAACATCTCGATCTTGTTTTGATTTCATTAGAAATTAATTCTGAAA
66 TATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAATTCTGAAA
* *
30118 CAAATGGAAAAACGATATTAGAAGGGTGAAAAACCCGTCAATATTTTTGGCATTGAATTATATAT
131 CAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATAT
*
30183 TTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTTCATGTCAGTTTTTAGCCGAAATCG
196 TTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAA-TTTTCGTGTCAGTTTTTAGCCGAAATCG
* * * *
30248 TGTACTAACCATCACGATTCTTGGCTAAAATCGCGTTTCGGATTCTGGCTCAGTTTTAAATGATT
260 TGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAATGATT
* * **
30313 TTTGGCAAAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTTAGCCACAATAAATTTA
325 TTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGATTTA
* *
30378 AGAATTTGTTTTTACGAGTATCTCAATCTTTGTTTCGATTTAATTAGAAATAAATTCAGGAAAAA
390 AGAATTTGTTTTTACGAGCATCTCAAT-TTTGTTTCGATTTAATTAGAAATAAATTC-GG--GAA
* * ** * * *
30443 AAAAAAAGAAAAACGATATTACAAACGTGAAAAACCCTTCAATACTTTTGGCATTAAATTATAAA
451 AAAAAAAGGAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATA
* * ** *
30508 TTTATTCTGAGTATTATGGCAAAAAATTGAGGAAAAACTTTTCTTGTCAGTTTTTGCAAAATTTT
516 TTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTT
* * *
30573 AGCCGAAATCGTGTACTAACTATCACGGTTTTTGGCAAAAAAACGCGTTCCGGAGTCCCGCCTCA
581 AGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC-TAAAAACGCGTTCCGGAGTCCCGGCTCA
**
30638 ATTTTGCCT
645 ATTTTGCAG
* ** * * * * * **
30647 GCTTTTTGGCGTAAAAACTCCTTGAAATATCTATATTCATCAAACCAAATCTGAGCCACATTATA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
* * * *
30712 TGTAAGGATTTTATTTTTTTTACGAGCATC-CGAATCTTATTTTGATTTAATTAGAAATTAATT-
66 TATAAGGA-TTTGTTTTTATT---AGCATCTCG-ATCTTGTTTTGATTTAATTAGAAATTAATTC
* * * * * **
30775 TGGAA-AAATGGGAAAACGATATTAGAAGCGCGTAAAGCCCGTCAATC-TTTTGGTGTTGAATTA
126 TGAAACAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTA
* * * * * *
30838 TATATTTTTTCTGAATATTTTGCAAAAAATTGAG-AAAAACTTTTCGGGTTAGTTTTTAGCCGAA
191 TATATTTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCGAA
* * * ** *
30902 ATCGTGTACAAAGCATCACGATTTTTGGCTATAAACGCGTTTAAGATCCCGGCTCAATTTTAAAT
256 ATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAAT
** * * *
30967 GATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAATTAAATCTCAACCACATTGGT
321 GATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGA
* * *
31032 TTTAAGAATTTGTTTTAACGAGCATCTAAATATTGTTTCGATTTAATTA-AAATAAATTCAGGG-
386 TTTAAGAATTTGTTTTTACGAGCATCTCAATTTTGTTTCGATTTAATTAGAAATAAATTC-GGGA
* * *
31095 AAAAAAAAGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATTTTTTTAGCGTTGAATTATAT
450 AAAAAAAAGGAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATAT
* * *
31160 A-TTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAACATTTTTCGGGTCAATTTTTGTAAAATTT
515 ATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTT
* *
31224 TAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTACCGGCTCA
580 TAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTCCCGGCTCA
31289 ATTTTGCAG
645 ATTTTGCAG
*
31298 GATATTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
* * *
31363 TATAAGGATTTGTTTTTATTAGCTTCTCGATCTTGTTTTGATTTTATTATAAATTAATTCTGAAA
66 TATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAATTCTGAAA
* **
31428 CAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATATTTTTGATATTGAATTATATAT
131 CAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATAT
* * * * *
31493 ATTTTCTATATATTTCGTAAAAAATTGAG--AAAAATTTTCATATTAGTTTTTAGCCGAAATCGT
196 TTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCGAAATCGT
* * * * *
31556 GTACTAACCATCACGATTCTTGGCTAAAATCGCGTTTCGGATTCTGGCTCAGTATTAAATGATTT
261 GTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAATGATTT
* * **
31621 TTGGCA-AAATGACTCCTTGAAATATCTATATTCATCAAACAAAATCTTAGCCACAATAAATTTA
326 TTGGCAGAAA-GACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGATTTA
*
31685 AGAATTTGTTTTTACGAGCATCTCAATCTTTGTTTCGATTTAATTAGAAATAAATTCAGGAAAAA
390 AGAATTTGTTTTTACGAGCATCTCAAT-TTTGTTTCGATTTAATTAGAAATAAATTCGGGAAAAA
* * * * *
31750 AAAAGGAAAAATGATATTACAAACATGAAAAACCCTTCAATATTTTTGGCATT-ATATTATATAT
454 AAAAGG-AAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGA-ATTATATAT
* * * ** *
31814 TTATTCTGAGTAATATGGCAAAAAATTGAGGAAAAACTTTTCATGTCAGTTTTTGCAAAATTTTA
517 TTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTA
* * * * *
31879 GTCGAAATCGTGTACTAACTATCACGGTTTTTGGCAAAAAAACGCGTTCCAGAGTCCCGCCTCAA
582 GCCGAAATCGTGTACTAACCATCACGGTTTTTGGC-TAAAAACGCGTTCCGGAGTCCCGGCTCAA
**
31944 TTTTGCCT
646 TTTTGCAG
* ** * * * * * **
31952 GCTTTTTGGCGTAAAAACTCCTTGAAATATCTATATTCATCAAACCAAATCTGAGCCACATTATA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
* * ** * * * *
32017 TGTAAGGTATTTTTTTTTTACGAGCATC-CGAATCTTATTTCGATATAATCAGAAATTAATT-TG
66 TATAAGG-A-TTTGTTTTTATTAGCATCTCG-ATCTTGTTTTGATTTAATTAGAAATTAATTCTG
* * * * * *
32080 GAA-AAATGGGAAAACGATATTAGAAGCGTGAAAAGCCTGTCAATATTTTTGGCGTTGAATTATA
128 AAACAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATA
* * * * * *
32144 TATTATTTCTGAATATTTTGCG-AAAAAATTGAGTAAAAACTTTTCGGGTTAGTTTTTAGCCGAA
193 TATTTTTTCTAAATA-TTT-CGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCGAA
* * * *
32208 ATCGTGTACTAAGCATCACGATTTTTGACTAAAAACGCGTTTCAGATACCGGCTCAGTTTTAAAT
256 ATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAAT
** * * *
32273 GATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAATTAAATCTCAACCACATTGGT
321 GATTTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGA
* * * *
32338 TTTAAGAATTTGTTTTAACGAGCATCTAAATATTGTTTCGATTTAATTA-AAATAAATTCAGGAA
386 TTTAAGAATTTGTTTTTACGAGCATCTCAATTTTGTTTCGATTTAATTAGAAATAAATTC-GGGA
* * *
32402 AAAAAAAAGGAAAACGATATTAGAAGCGTGAAAATACCCTTCAATTTTTTTGGCATTTAATTATA
450 AAAAAAAAGGAAAACGATATTAGAAACGTGAAAA-ACCCTTCAATTTTTTTGGCGTTGAATTATA
*
32467 TATTTTTTCTGAGTATTCTGGCAAAAAATTGATGAAAAACTTTTCGGGTCAATTTTTGCAAAATT
514 TATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATT
* *
32532 TTAGCCAAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTGCCGGCTC
579 TTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTCCCGGCTC
32597 AATTTTGCAG
644 AATTTTGCAG
*
32607 GATATTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
32672 TATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAATTCTGAAA
66 TATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAATTCTGAAA
* *
32737 CAAATGGAAAGACGATATTAGAAGGGTGAAAAGCCCGTCAGTCTTTTTGGCATTGAATTATATA-
131 CAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATAT
**
32801 TTTTTCTAAATATTTCGTAAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAATCGAAATCG
196 TTTTTCTAAATATTTCGT-AAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCGAAATCG
* ** *
32866 TGTACTAACCATCACGATATTTGGCTAAAAACTTGTTTCGGATCCCGGCTTAGTTTTAAATGATT
260 TGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAATGATT
32931 TTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGATTTA
325 TTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGATTTA
*
32996 AGAATTT-TTTTTACGAGCATCTCAATTTTGTTTCGATTTAATTAGAAATAAGTTCGGGAAAAAG
390 AGAATTTGTTTTTACGAGCATCTCAATTTTGTTTCGATTTAATTAGAAATAAATTCGGG---AA-
* * * *
33060 AAAAAAAGAAAAACGATATTGGAAACGTGAAAAACCCTTCAATATTTTTGGCGTTAAATTATATA
451 AAAAAAAGGAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATA
* **
33125 TTTTTTCTGACTATAATGGCAAAAAAATTGAGGAAAAGA-TTTTCGGGT-AAGTTTTTGCAAAAT
516 TTTTTTCTGAGTATTCTGGC-AAAAAATTGAGGAAAA-ACTTTTCGGGTCAA-TTTTTGCAAAAT
*
33188 TTTAGCCGAAATCGTGTGCTTTTTTTTTGCCAACGAAATCGTGTACTAACTATCACGGTTTTTGG
578 TTT-------A-----------------G-C--CGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * * *
33253 CAAAAAAACGCGTTACGGACTCCCGGCTAAATTTTGCAT
616 C-TAAAAACGCGTTCCGGAGTCCCGGCTCAATTTTGCAG
* ** * * *
33292 GATTTTTAGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGTA
1 GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
* ** * *
33357 TATAAGGATTTGTGTTTACGAGCATC-CGAATCTTGTTTCGATTTAATTAAAAATTAATTC-GCA
66 TATAAGGATTTGTTTTTATTAGCATCTCG-ATCTTGTTTTGATTTAATTAGAAATTAATTCTG-A
* * * * * * *
33420 AAAAAATGGAAAAACGAAATTCGAAGCGCGAAAAACCCGTCAATCTTTTTGGCGTTGAATTATAT
129 AACAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATAT
* * * * * * * * *
33485 ATTTTTTCTGAATATTTTGCAAACAATTGA-AAAAAACTCTTCGGGTTAGTTTTTAGCTGAAATC
194 ATTTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCGAAATC
* * * * *
33549 GTGTACTTAGCATCACGACTTTTGGCTAAAAACGCGTTTCGG-TCCCAGCTCAGTTTTAAATTAT
259 GTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAATGAT
* * * * *
33613 TTTTGGCAGAAAGACTCCTTGAAATAACTATATTTATTTAACAAAATCCCATCCACAATGGATTT
324 TTTTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGATTT
* *
33678 AATAATTTGTTTTTACGAGCATCTCAATCTTTGTTTCTATTTAATTAGAAATAAATTC-GGAAAA
389 AAGAATTTGTTTTTACGAGCATCTCAAT-TTTGTTTCGATTTAATTAGAAATAAATTCGGGAAAA
* * * *
33742 GAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATTTTTTTGGCGTTAAATGATATAT
453 AAAAAGG-AAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATAT
* * * *
33807 TTTTTCTGAGTATTGTGGC-AAAACTTGAGGAAATACTTTTC-GG--AGTTTTTGCAAAATTTTA
517 TTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTA
*
33868 GCCGAAATCGTGTACTATCCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAAG-CCTCGGCTCA
582 GCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGG-AGTCC-CGGCTCA
* *
33932 ATTTTGTAT
645 ATTTTGCAG
* * *
33941 GATTTTTGGCGTAAATTAAGACTCCTTGAAATAT-TCATATTCATCGAATCAAATGTCAGCCACA
1 GATTTTTGGC--ACA--AAGACTCCTTGAAATATCT-ATATTCATCGAACCAAATGTCAACCACA
** *
34005 TTGGATATAAGGATTTGTTTTTACGAGCATCT-GAATCTTGTTTCGATTTAATTAGAAATTAATT
61 TTGGATATAAGGATTTGTTTTTATTAGCATCTCG-ATCTTGTTTTGATTTAATTAGAAATTAATT
* * * * * * *
34069 CGGAAAAAAATGGAAAAATGATATTAGAAGCGTGAAAAGGCCGTCAATATATTTT-GCATTCAAT
125 CTGAAACAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCT-TTTTGGCATTGAAT
* * * * * * * ** *
34133 TATATATTTTTTTTTTGAGTATTGTGGCAGAAAATTGAGAATAAACGTTTCGGGTCAGTTTTTAG
189 TATATA--TTTTTTCTAAATATT-TCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAG
* * * * * * * *
34198 CCGAAATTGTGTACTAACCATCACGGTTTTTGACTAAAAAAGCGTTCCTGG-GCCAGGGCTCTGT
251 CCGAAATCGTGTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTC-GGATCC-CGGCTCAGT
** ** * * *
34262 TTTGCATGATTTTTGGC-GCCGAGACTCCTTGAAATATCTTTTTTCATCTAATC-AAATCTCACC
314 TTTAAATGATTTTTGGCAG-AAAGACTCCTTGAAATATCTATATTCATCTAA-CAAAATCTCAGC
* * * * * *
34325 CACATTGGATCTAAGGATTTGCTTTTAC-ATGCATCTGAATTTTGTTTCGATTTAATTAGAAATT
377 CACAATGGATTTAAGAATTTGTTTTTACGA-GCATCTCAATTTTGTTTCGATTTAATTAGAAATA
* * * * * ** * *
34389 GATTC-AGAAAAAAATATGTG-AAACAATATTAAAAACGTGAAAAGTCCTCCAATCTTTTTGGCG
441 AATTCGGGAAAAAAA-AAG-GAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCG
* * * * * * ** *
34452 TTGAATTATATATATTTTATCAGTATTTTTGCCAAAAATTGATTAAAAATTTTTCGGGTC-ATTT
504 TTGAATTATATATTTTTTCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTT
34516 TT
569 TT
34518 ACCATCATGG
Statistics
Matches: 5616, Mismatches: 709, Indels: 363
0.84 0.11 0.05
Matches are distributed among these distances:
640 54 0.01
641 40 0.01
643 6 0.00
644 1 0.00
646 45 0.01
647 56 0.01
648 31 0.01
649 359 0.06
650 100 0.02
651 203 0.04
652 270 0.05
653 1021 0.18
654 563 0.10
655 344 0.06
656 308 0.05
657 315 0.06
658 424 0.08
659 211 0.04
660 58 0.01
661 41 0.01
662 6 0.00
663 34 0.01
664 1 0.00
666 4 0.00
667 1 0.00
669 13 0.00
670 1 0.00
671 7 0.00
672 66 0.01
673 24 0.00
674 55 0.01
675 35 0.01
676 180 0.03
677 4 0.00
678 13 0.00
679 99 0.02
680 7 0.00
681 73 0.01
682 47 0.01
683 128 0.02
684 118 0.02
685 235 0.04
686 15 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (653 bp):
GATTTTTGGCACAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATGTCAACCACATTGGA
TATAAGGATTTGTTTTTATTAGCATCTCGATCTTGTTTTGATTTAATTAGAAATTAATTCTGAAA
CAAATGGAAAAACGATATTAGAAGGGTGAAAAGCCCGTCAATCTTTTTGGCATTGAATTATATAT
TTTTTCTAAATATTTCGTAAAAAATTGAGAAAAAAATTTTCGTGTCAGTTTTTAGCCGAAATCGT
GTACTAACCATCACGATTTTTGGCTAAAAACGCGTTTCGGATCCCGGCTCAGTTTTAAATGATTT
TTGGCAGAAAGACTCCTTGAAATATCTATATTCATCTAACAAAATCTCAGCCACAATGGATTTAA
GAATTTGTTTTTACGAGCATCTCAATTTTGTTTCGATTTAATTAGAAATAAATTCGGGAAAAAAA
AAGGAAAACGATATTAGAAACGTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTTTT
TCTGAGTATTCTGGCAAAAAATTGAGGAAAAACTTTTCGGGTCAATTTTTGCAAAATTTTAGCCG
AAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTCCGGAGTCCCGGCTCAATTTTG
CAG
Found at i:38188 original size:29 final size:28
Alignment explanation
Indices: 38126--38190 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 28
38116 AACTTGTATG
*
38126 ATTTGGACGTTTTGTCCCCTAAACTTTA
1 ATTTGGACGTTTTGTCCCCTAAACTTCA
*
38154 ATTTTGGATGTTTTG-CTCCCTAAACTTGCA
1 A-TTTGGACGTTTTGTC-CCCTAAACTT-CA
38184 ATTTGGA
1 ATTTGGA
38191 ACCATTTTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 2 0.06
29 28 0.88
30 2 0.06
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.43
Consensus pattern (28 bp):
ATTTGGACGTTTTGTCCCCTAAACTTCA
Found at i:50880 original size:20 final size:20
Alignment explanation
Indices: 50843--50881 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
50833 GATAAACACT
* *
50843 AAAAAAATATATAAAAATTC
1 AAAAAAAAAGATAAAAATTC
*
50863 AAAAAAAAAGATATAAATT
1 AAAAAAAAAGATAAAAATT
50882 ACCATTTTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAAAAAAAGATAAAAATTC
Found at i:52542 original size:21 final size:21
Alignment explanation
Indices: 52516--52557 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
52506 CATCAGAGGG
*
52516 GTTTTGGTTTTCCTTCAAGGA
1 GTTTTGATTTTCCTTCAAGGA
52537 GTTTTGATTTTCCTTCAAGGA
1 GTTTTGATTTTCCTTCAAGGA
52558 TGCTGCTGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.21, T:0.48
Consensus pattern (21 bp):
GTTTTGATTTTCCTTCAAGGA
Found at i:67078 original size:13 final size:13
Alignment explanation
Indices: 67060--67091 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
67050 GAGTTCAATA
67060 TAAATATATAATT
1 TAAATATATAATT
67073 T-AA-ATATAATT
1 TAAATATATAATT
67084 TAAATATA
1 TAAATATA
67092 ATTTATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 4
0.81 0.00 0.19
Matches are distributed among these distances:
11 9 0.53
12 4 0.24
13 4 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAATATATAATT
Found at i:67081 original size:11 final size:11
Alignment explanation
Indices: 67065--67096 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
67055 CAATATAAAT
67065 ATATAATTTAA
1 ATATAATTTAA
67076 ATATAATTTAA
1 ATATAATTTAA
67087 ATATAATTTA
1 ATATAATTTA
67097 TTAATTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
ATATAATTTAA
Found at i:69223 original size:9 final size:9
Alignment explanation
Indices: 69209--69237 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
69199 CTATACTCAA
69209 ATATAAATT
1 ATATAAATT
69218 ATATAAATT
1 ATATAAATT
69227 ATATAAATT
1 ATATAAATT
69236 AT
1 AT
69238 TTACTAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
ATATAAATT
Found at i:74613 original size:15 final size:15
Alignment explanation
Indices: 74593--74623 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
74583 ATGGGAAAGC
74593 TCTCCCAACATTAAT
1 TCTCCCAACATTAAT
74608 TCTCCCAACATTAAT
1 TCTCCCAACATTAAT
74623 T
1 T
74624 TTCTTTATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (15 bp):
TCTCCCAACATTAAT
Found at i:84022 original size:31 final size:31
Alignment explanation
Indices: 83984--84117 Score: 187
Period size: 31 Copynumber: 4.3 Consensus size: 31
83974 TATTAGGGAC
*
83984 TGAGCCGATTTTGCACCGTTAGAGACTGATT
1 TGAGCCGATTTTGCACCGTTAGGGACTGATT
**
84015 TGAGCCGATTTTGCAATGTTAGGGACTGATT
1 TGAGCCGATTTTGCACCGTTAGGGACTGATT
* * *
84046 TGAGCCAATTTTGCACTGTTCGGGACTGATT
1 TGAGCCGATTTTGCACCGTTAGGGACTGATT
* *
84077 TGAGCCGATTTTGCATCGTTAGGGACTAATT
1 TGAGCCGATTTTGCACCGTTAGGGACTGATT
*
84108 TTAGCCGATT
1 TGAGCCGATT
84118 AGAAAGTTAG
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 91 1.00
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (31 bp):
TGAGCCGATTTTGCACCGTTAGGGACTGATT
Found at i:84509 original size:19 final size:19
Alignment explanation
Indices: 84478--84522 Score: 69
Period size: 17 Copynumber: 2.5 Consensus size: 19
84468 AACCGTTTAA
84478 TAATTATAT-ATATATA-T
1 TAATTATATAATATATATT
84495 T-ATTATATAATATATATT
1 TAATTATATAATATATATT
84513 TAATTATATA
1 TAATTATATA
84523 TATTAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.28
17 8 0.32
18 2 0.08
19 8 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TAATTATATAATATATATT
Found at i:85634 original size:31 final size:31
Alignment explanation
Indices: 85596--85658 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
85586 GACTCAGTTA
* * *
85596 ACCTAATCTTGTGAGTACA-TGAGCTAAATTG
1 ACCTAATCTTCTGAATACACAGA-CTAAATTG
85627 ACCTAATCTTCTGAATACACAGACTAAATTG
1 ACCTAATCTTCTGAATACACAGACTAAATTG
85658 A
1 A
85659 TATTTTTTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 26 0.93
32 2 0.07
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (31 bp):
ACCTAATCTTCTGAATACACAGACTAAATTG
Found at i:86276 original size:3 final size:3
Alignment explanation
Indices: 86268--86336 Score: 138
Period size: 3 Copynumber: 23.0 Consensus size: 3
86258 ATAATTATTG
86268 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
86316 AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT
86337 GAAATAATTA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:92076 original size:25 final size:24
Alignment explanation
Indices: 92035--92096 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 24
92025 GTGGATTGTA
*
92035 AAAT-AATTTGAATAATTAAGACATT
1 AAATAAATTT-AAGAATTAA-ACATT
92060 AAATAAATTTAAGAATTAAACATT
1 AAATAAATTTAAGAATTAAACATT
*
92084 AAA-AAATTCAAGA
1 AAATAAATTTAAGA
92097 CTGACCCAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 9 0.26
24 8 0.24
25 12 0.35
26 5 0.15
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (24 bp):
AAATAAATTTAAGAATTAAACATT
Done.