Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015842.1 Corchorus olitorius cultivar O-4 contig15875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45294

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1731--2358
321
2.0
320
83
5
802
36
15
15
32
1.88
2839--5549
340
8.3
328
75
11
1890
36
15
14
34
1.88
5948--5977
15
1.9
16
93
6
53
56
0
0
43
0.99
5937--6002
35
1.9
34
84
9
89
56
0
3
40
1.15
6168--6197
14
2.1
15
93
6
53
53
0
0
46
1.00
6269--6296
13
2.2
13
100
0
56
53
0
21
25
1.46
7803--7835
6
5.3
6
92
7
57
36
15
15
33
1.88
11410--11461
24
2.2
24
82
0
59
9
9
53
26
1.64
11512--11567
18
3.1
17
84
5
67
12
3
57
26
1.52
11594--11825
30
7.7
30
72
6
139
24
3
48
23
1.65
11594--12209
60
10.4
60
76
8
447
23
3
49
23
1.66
11674--11964
138
2.1
138
85
1
395
25
3
49
21
1.65
11764--11960
48
4.2
48
66
17
135
25
3
49
20
1.65
11737--11888
78
1.9
78
86
2
216
26
3
48
21
1.65
11902--11963
18
3.8
18
67
30
57
22
1
51
24
1.57
12112--12180
18
3.8
18
68
0
57
17
2
50
28
1.60
11812--12203
30
12.9
30
79
6
308
22
4
50
22
1.66
12195--12248
18
2.9
19
70
10
58
9
9
57
24
1.59
12097--12239
66
2.2
66
82
2
162
17
4
52
25
1.64
12195--12278
36
2.3
36
83
4
98
10
10
54
23
1.66
12325--12359
18
1.9
18
94
0
61
0
2
57
40
1.14
12427--12461
18
1.9
18
94
0
61
11
0
57
31
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12357--12446
42
2.1
42
95
0
162
20
5
57
16
1.58
15668--15699
16
2.0
16
93
0
55
40
12
28
18
1.87
17141--17178
20
1.9
20
88
0
58
42
21
2
34
1.67
34047--34153
52
2.1
52
98
0
205
25
15
14
43
1.85
36934--37071
69
2.0
69
94
0
240
22
16
29
31
1.96

Tables:   1

The End!