Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015843.1 Corchorus olitorius cultivar O-4 contig15876, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72258

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9191--9223
9
3.7
9
100
0
66
57
0
0
42
0.98
12649--12708
30
2.0
30
90
0
93
43
5
15
36
1.68
12651--12715
30
2.2
30
85
0
85
44
7
13
33
1.73
19978--20031
3
18.0
3
92
0
90
0
0
62
37
0.95
34555--34588
2
17.5
2
93
6
61
47
0
0
52
1.00
35940--35986
2
24.5
2
83
16
64
51
2
0
46
1.13
36930--36959
14
2.1
14
93
0
51
0
0
13
86
0.57
39310--39341
5
6.4
5
100
0
64
43
0
0
56
0.99
39959--40020
6
10.0
6
94
5
106
35
16
0
48
1.46
40237--40317
39
2.0
40
92
2
137
50
8
3
37
1.51
40308--40354
25
1.9
24
95
4
85
29
6
8
55
1.55
40506--40714
105
2.0
103
94
3
366
47
15
15
20
1.82
60845--60930
45
1.9
44
84
11
113
51
9
13
25
1.71
63666--63747
32
2.6
32
98
0
155
24
13
32
29
1.93
65342--65385
22
2.0
23
81
4
54
34
11
9
45
1.72
65829--66000
93
1.8
93
89
0
272
52
1
12
33
1.49
67449--67519
35
2.0
35
100
0
142
47
8
5
38
1.57
67765--67826
31
2.0
31
90
0
97
43
6
20
29
1.77
69022--69085
28
2.2
29
94
2
112
57
14
14
14
1.65
69022--69093
28
2.6
27
85
12
76
56
12
16
13
1.66
71316--71376
32
1.9
32
93
0
104
47
6
19
26
1.74
71899--72258
123
2.9
123
96
3
639
49
1
10
38
1.45

Tables:   1

The End!