Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015845.1 Corchorus olitorius cultivar O-4 contig15878, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6088
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31


Found at i:3243 original size:21 final size:22

Alignment explanation


    Indices: 3203--3243  Score: 57
    Period size: 21  Copynumber: 1.9  Consensus size: 22

       3193 GACAAACTCG

                           *      
       3203 TAACCCGAATAACCCGAGAAGA
          1 TAACCCGAATAACCCAAGAAGA

                      *         
       3225 TAACCCG-ATGACCCAAGAA
          1 TAACCCGAATAACCCAAGAA

       3244 TATTATAAAC


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  21   10  0.59
  22    7  0.41

ACGTcount: A:0.44, C:0.29, G:0.17, T:0.10


Consensus pattern (22 bp):   
TAACCCGAATAACCCAAGAAGA

Found at i:3458 original size:31 final size:31

Alignment explanation


    Indices: 3423--3481  Score: 84
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       3413 TGAGGCCAAA

                        *                   
       3423 ACCCGA-ACCTGCATGACCCTAAATCCAGCAG
          1 ACCCGAGACCTGAATGA-CCTAAATCCAGCAG

                                *       
       3454 ACCCGAGACCTGAATGACCTGAATCCAG
          1 ACCCGAGACCTGAATGACCTAAATCCAG

       3482 ATGAGTCGAA


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  31   16  0.64
  32    9  0.36

ACGTcount: A:0.32, C:0.36, G:0.19, T:0.14


Consensus pattern (31 bp):   
ACCCGAGACCTGAATGACCTAAATCCAGCAG

Done.