Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015846.1 Corchorus olitorius cultivar O-4 contig15879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53525

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1033--1110
29
2.6
30
71
6
77
42
26
15
15
1.87
12283--12353
35
2.0
35
84
10
92
15
15
26
42
1.87
12447--12481
18
1.9
18
94
0
61
51
11
8
28
1.67
12520--12561
15
3.1
14
87
12
61
50
0
0
50
1.00
12613--12644
16
2.0
16
93
0
55
46
0
0
53
1.00
12613--12658
18
2.4
18
85
7
56
47
0
2
50
1.13
12578--12653
19
4.0
19
70
19
61
43
0
3
52
1.19
12681--12757
35
2.3
35
90
4
131
42
20
16
19
1.89
13850--13875
12
2.2
12
100
0
52
69
15
0
15
1.20
16275--16316
21
2.0
21
90
0
66
54
16
19
9
1.69
17450--17475
7
3.7
7
100
0
52
46
26
0
26
1.53
17492--17573
41
2.0
41
100
0
164
43
7
7
41
1.60
27686--27772
41
2.1
41
100
0
174
45
6
9
37
1.63
33172--33315
73
2.0
73
100
0
288
17
19
15
47
1.82
35258--35309
19
2.7
19
78
3
59
46
21
11
21
1.82
44226--44261
13
2.6
14
86
8
56
36
5
16
41
1.72
45879--45911
15
2.2
15
100
0
66
33
12
27
27
1.92
46644--46670
13
2.1
13
100
0
54
0
0
14
85
0.61
47729--48311
31
19.0
31
92
3
948
22
13
16
48
1.80
47729--48483
62
12.5
62
88
6
1108
21
12
16
48
1.80
47729--48483
93
8.3
93
88
6
1108
21
12
16
48
1.80
48292--48330
19
2.1
19
100
0
78
15
15
15
53
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48311--48463
31
4.9
31
95
0
252
18
13
19
48
1.81
48230--48481
81
3.0
81
81
11
271
20
12
18
48
1.80
48199--48423
112
2.0
112
92
0
378
20
12
18
48
1.80
48168--48454
143
2.0
143
93
0
484
20
12
18
48
1.80
48492--48541
22
2.3
22
82
0
64
20
30
22
28
1.98
52298--53525
321
3.8
317
83
6
1382
34
14
15
35
1.88

Tables:   1

The End!