Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015848.1 Corchorus olitorius cultivar O-4 contig15881, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47623

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10597--10696
47
2.1
49
88
5
150
43
10
32
15
1.79
18329--18389
29
2.1
30
87
9
90
44
1
3
50
1.28
19305--19566
107
2.5
105
88
3
386
41
8
9
41
1.67
26663--26816
51
3.0
52
93
1
256
30
20
14
35
1.92
27591--27639
18
2.8
17
81
9
53
26
16
44
12
1.82
30894--30949
21
2.8
19
86
5
76
30
23
10
35
1.89
41129--41172
18
2.4
18
84
0
52
25
15
36
22
1.94
42043--42084
19
2.2
19
86
4
57
14
2
7
76
1.10
42813--42925
56
2.0
56
100
0
226
25
19
17
37
1.94
42927--42996
36
1.9
36
88
0
104
47
12
15
24
1.81
45416--45498
41
2.0
41
97
0
157
25
22
20
31
1.98
45416--45517
41
2.5
41
90
3
143
26
21
18
33
1.96
47526--47565
16
2.4
16
95
4
71
12
0
0
87
0.54
47526--47563
8
4.8
8
87
12
60
10
0
0
89
0.49

Tables:   1

The End!