Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015849.1 Corchorus olitorius cultivar O-4 contig15882, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 29351
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32


Found at i:2300 original size:21 final size:19

Alignment explanation


    Indices: 2258--2312  Score: 67
    Period size: 21  Copynumber: 2.8  Consensus size: 19

       2248 GGTTTTACTT

                              *
       2258 GGTGGTGGTGGTGG-TGGG
          1 GGTGGTGGTGGTGGTTGGC

                                 
       2276 GGTGGTGGTGGTGGTTGCAGC
          1 GGTGGTGGTGGTGGTTG--GC

                       *    
       2297 GGTGGTGGTGGGGGTT
          1 GGTGGTGGTGGTGGTT

       2313 CTTCTGGGGT


Statistics
Matches: 32,  Mismatches: 2, Indels: 3
        0.86            0.05        0.08

Matches are distributed among these distances:
  18   14  0.44
  19    2  0.06
  21   16  0.50

ACGTcount: A:0.02, C:0.04, G:0.65, T:0.29


Consensus pattern (19 bp):   
GGTGGTGGTGGTGGTTGGC

Found at i:2307 original size:3 final size:3

Alignment explanation


    Indices: 2257--2290  Score: 59
    Period size: 3  Copynumber: 11.3  Consensus size: 3

       2247 TGGTTTTACT

                                    *                    
       2257 TGG TGG TGG TGG TGG TGG GGG TGG TGG TGG TGG T
          1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG TGG T

       2291 TGCAGCGGTG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32


Consensus pattern (3 bp):   
TGG

Done.