Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015851.1 Corchorus olitorius cultivar O-4 contig15884, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19946
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:3160 original size:78 final size:78
Alignment explanation
Indices: 3032--3336 Score: 475
Period size: 78 Copynumber: 3.8 Consensus size: 78
3022 TTGTAATTAA
* * * *
3032 TGTTCCAGCACAACCAACAACTTATAATTATTATGGTCCAGCACTACCACCAACTGCTGGTTATG
1 TGTTCCAGCACAACCAAC-ACCT-T-CTTATTATGGTCCAACACTACCACCAACTGTTGGTTATG
* *
3097 GATCAAGCCTTGCAAT
63 GATCAGGCCTTGCAAG
*
3113 TGTTCCAGCACAACCAACACCTTCTTATTATGGTCCAGCACTACCACCAACTGTTGGTTATGGAT
1 TGTTCCAGCACAACCAACACCTTCTTATTATGGTCCAACACTACCACCAACTGTTGGTTATGGAT
3178 CAGGCCTTGCAAG
66 CAGGCCTTGCAAG
3191 TGTTCCAGCACAACCAACACCTTCTTATTATGGTCCAACACTACCACCAACTGTTGGTTATGGAT
1 TGTTCCAGCACAACCAACACCTTCTTATTATGGTCCAACACTACCACCAACTGTTGGTTATGGAT
3256 CAGGCCTTGCAAG
66 CAGGCCTTGCAAG
* *
3269 TGTTCCAGCACAACCAACACCTTCTTATTATGATGGTCCAACACTACCACCAACTGTTGATCATG
1 TGTTCCAGCACAACCAACACCTTCTTA-T-T-ATGGTCCAACACTACCACCAACTGTTGGTTATG
3334 GAT
63 GAT
3337 GTCTTGCAAT
Statistics
Matches: 213, Mismatches: 8, Indels: 6
0.94 0.04 0.03
Matches are distributed among these distances:
78 155 0.73
79 2 0.01
80 4 0.02
81 52 0.24
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (78 bp):
TGTTCCAGCACAACCAACACCTTCTTATTATGGTCCAACACTACCACCAACTGTTGGTTATGGAT
CAGGCCTTGCAAG
Found at i:7332 original size:6 final size:6
Alignment explanation
Indices: 7321--7348 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7311 AGAAAAGACC
7321 ACATTA ACATTA ACATTA ACATTA ACAT
1 ACATTA ACATTA ACATTA ACATTA ACAT
7349 AGCCTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32
Consensus pattern (6 bp):
ACATTA
Found at i:8732 original size:28 final size:28
Alignment explanation
Indices: 8695--8788 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
8685 GGAAAAAAAT
8695 TAGCAAAGTCCACTGGTAATAGTTTAAA
1 TAGCAAAGTCCACTGGTAATAGTTTAAA
*
8723 TAGCAAAGTCCACTAGTAATAGTTT-AA
1 TAGCAAAGTCCACTGGTAATAGTTTAAA
* *
8750 TGAGCAAAGTCCACTAGG-GATAGTTTAAT
1 T-AGCAAAGTCCACT-GGTAATAGTTTAAA
8779 TAGCAAAGTC
1 TAGCAAAGTC
8789 GAGATCAAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
27 3 0.05
28 53 0.90
29 3 0.05
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (28 bp):
TAGCAAAGTCCACTGGTAATAGTTTAAA
Found at i:9074 original size:31 final size:31
Alignment explanation
Indices: 8997--9074 Score: 102
Period size: 31 Copynumber: 2.5 Consensus size: 31
8987 ACGGTGTCCG
*
8997 ACGTGACATGCCACGTGTACAAAAAAGTGAC
1 ACGTGGCATGCCACGTGTACAAAAAAGTGAC
* ** *
9028 ATGTGGCACACCACGTGTACCAAAAAGTGAC
1 ACGTGGCATGCCACGTGTACAAAAAAGTGAC
*
9059 ACGTGGCATGTCACGT
1 ACGTGGCATGCCACGT
9075 CAGACGCCGT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.33, C:0.24, G:0.24, T:0.18
Consensus pattern (31 bp):
ACGTGGCATGCCACGTGTACAAAAAAGTGAC
Found at i:9233 original size:2 final size:2
Alignment explanation
Indices: 9226--9251 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9216 GCATTTATGC
9226 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
9252 GTACCATACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13136 original size:42 final size:42
Alignment explanation
Indices: 13089--13168 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
13079 AAGATTTTAT
* * *
13089 GACAGCGATGAGGATGGAGAGAGTGTTGATGATTTCAATTCG
1 GACAGCAATGAGGATGAAGAGAATGTTGATGATTTCAATTCG
13131 GACAGCAATGAGGATGAAGAGAATGTTGATGATTTCAA
1 GACAGCAATGAGGATGAAGAGAATGTTGATGATTTCAA
13169 CTGGGATGCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.34, C:0.09, G:0.33, T:0.25
Consensus pattern (42 bp):
GACAGCAATGAGGATGAAGAGAATGTTGATGATTTCAATTCG
Found at i:17268 original size:330 final size:320
Alignment explanation
Indices: 16336--17625 Score: 1276
Period size: 326 Copynumber: 4.0 Consensus size: 320
16326 AGTAAAAATG
* * * * * * *
16336 ACCCG-AAAGATTTTTAATCAATTTTTGGCAAAAATACTGATAAAATATATATAATTCAACGCCA
1 ACCCGAAAAG-TTTTT-CTCAATTTTT-GCCACAATACTCAAAAAAAATATAT-ATTCAATGCCA
* ** * * **
16400 AAAATATTGGA-GGACTTTTCACGTTTTTAATATCG--TTTCACATATTTTTTTTGAATTAATTT
62 AAAAAATT-GACGGGTTTTTCACGCTTCTAATATCGTTTTTC-CAT-TTTTTTCCGAATTAATTT
* * *
16462 CTAATTAAATCGAAACAAAATTCAGATGCAT-GTAAAAGCAAATCCTTAGATCCAATGTGGCTGA
124 CTAATTAAATCGAAACAAGATTCAGATGC-TCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
* **** * *
16526 GATTTGATTAGATGAATAAAGATATTTCAAGGAGTCTCGGCGCAAAAAATCATGCAAAACAGAGC
188 GATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAACTGAGC
* * * * * *
16591 CTTGG-C-CCAGGAACACTTTTTTAGTCAAAAACCGTGATGGTTAGTACACAATTTCGGCTAAAA
253 C-GGGACTCCAGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT-AAA
16654 ACTG-A
316 A-TGAA
* *
16659 A-CCGAAACGTTTATTCTCAATTTTCTGCCACAATACTCCCAAAAAAAATATATATAACTGAATG
1 ACCCGAAAAGTTT-TTCTCAATTTT-TGCCACAATACT--CAAAAAAAATATATAT---TCAATG
** *
16723 -CAAAAAATATTGACGGCCTTTTCACGCTTCTAATATCATTTTTCCATTTTTTTCCGAATTAATT
59 CCAAAAAA-ATTGACGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATT
16787 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
123 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGA
* * *
16852 CATTTGATTTGATGAATAT-GAATATTTCAAGGAGTCTTAGTTTATGCCAAAAATCATGCAAAAT
188 GATTTGATTAGATGAATATAG-ATATTTCAAGGAGTC----TTTATGCCAAAAATCATGCAAAAC
* *
16916 TGAGCCGAGACTCC-GGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
248 TGAGCCGGGACTCCAGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
16980 AAAATTTTGCAAAA
313 AAAA---TG---AA
* * *
16994 ACTCCGAAAAGTTTTTCCTCAAGTTTTGCCACAATACTTAAAAAAAATATATCATTTAATGCCAA
1 AC-CCGAAAAGTTTTT-CTCAATTTTTGCCACAATACTCAAAAAAAATATAT-ATTCAATGCCAA
* * *
17059 AAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTCC-TTTTTTCCCCCCGAATTTATTTC
63 AAAAATTGACGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTT---TCCGAATTAATTTC
** * * * * *
17123 TAATTAAAAAGAAACAAAGATTGAGATGCTCGTAAAAACAAATTCTTAAATCCATTGTGGATGAG
125 TAATTAAATCGAAAC-AAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * * **
17188 ATTTTG-TTAAATGAATATAGATATTTCAAGGGGTCTTTCTGCCAAAAATCATTTAAAACTGAGC
189 A-TTTGATTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAACTGAGC
* * *
17252 CGGGA-TCC-GAAACGCGTTTTTAGCCAAAAATCGTGAT-G--AATACACGATTTCGGCTAAAAA
253 CGGGACTCCAGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAT
**
17312 CTA
318 GAA
* * *
17315 ACCCGAAGAGTTTTTCTCAATTGTTTG-CAAAATTTA-TCAAAAAAAATATATAATTCAACGCCA
1 ACCCGAAAAGTTTTTCTCAATT-TTTGCCACAA--TACTCAAAAAAAATATAT-ATTCAATGCCA
* * *
17378 AAAAGATTGACGGGCTTTTT-GCGCTACTAATATCGTTTTTCCATTTTTTTTTCCGAATTAATTT
62 AAAAAATTGACGGG-TTTTTCACGCTTCTAATATCGTTTTTCCA--TTTTTTTCCGAATTAATTT
* *
17442 CTAATTAAATCGAAACAAGATACAGATGCTCGTAAAAACAAATCCTTATATACAATGTGGCTGAG
124 CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAG
* * * *
17507 ATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAATTGAGAC
189 ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAACTGAGCC
* * * *
17572 GGGAGTCCGGAAA-GCGTTTTTTTTTGCCAAAAACCGTGATAGTTAGTACACGAT
254 GGGACTCCAGAAACGCG---TTTTTAGCCAAAAACCGTGATGGTTAGTACACGAT
17626 ATCGTTGGCA
Statistics
Matches: 813, Mismatches: 101, Indels: 103
0.80 0.10 0.10
Matches are distributed among these distances:
318 4 0.00
319 108 0.13
320 102 0.13
321 14 0.02
322 23 0.03
323 34 0.04
324 12 0.01
325 10 0.01
326 142 0.17
327 23 0.03
328 4 0.00
329 6 0.01
330 100 0.12
331 39 0.05
332 38 0.05
333 7 0.01
334 38 0.05
335 72 0.09
336 19 0.02
337 18 0.02
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (320 bp):
ACCCGAAAAGTTTTTCTCAATTTTTGCCACAATACTCAAAAAAAATATATATTCAATGCCAAAAA
AATTGACGGGTTTTTCACGCTTCTAATATCGTTTTTCCATTTTTTTCCGAATTAATTTCTAATTA
AATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGAT
TAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAACTGAGCCGGGACTC
CAGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATGAA
Found at i:18997 original size:334 final size:328
Alignment explanation
Indices: 17852--19946 Score: 1603
Period size: 334 Copynumber: 6.5 Consensus size: 328
17842 TAAATCCAAT
* * * * *
17852 GCCAAAAAGATTGACGGGCTTTTCACTCTTCTAATATCGTCTTTC-CATTTGTTT--TAGAATTA
1 GCCAAAAA-ATTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCTC-TTT-TTTCCCA-AATTA
* ** *
17914 ATTTCTAATTAAATCAAAACAAGA-TCGAGATGCTAATAAAAACAAATCCTTATATCCAATGTTG
62 ATTTCTAATTAAATCGAAACAAGATTC-AGATGCTCGTAAAAACAAATTCTTATATCCAATG-TG
* * *
17978 TTGACATTTGGTTCGAGGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCCTGCAAAATT
125 TTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAATT
* * * * *
18043 GAGCCGGCACTCCGGAATGCGTTTTTAG-TAAAAAACTGTGATGGTTAGTACACAATTTCGGCTA
190 GAGCCGGGA-TCCGGAACGCGTTTTTAGCCAAAAATC-GTGATGGTTAGTACACGATTTCGG-TA
* * * *
18107 AAATTTTTCAAAAACTGACCCGAAAAGTTTTTCCTCAATTTTTTGCTAGAATACTCAGGAAAAAT
252 AAATTTTGCAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCAGAATACTCAGAAAAAAT
18172 ATATAATTCAAC
317 ATATAATTCAAC
* * *
18184 GCCAAAAAAATTGAAGGA-TATTTCACGCTTCTAATATCGTTTTTCTTTTTTTTTCCCCGAATTT
1 GCC-AAAAAATTGAAGGACT-TTTCACGCTTCTAATATCGTTTTTC-TCTTTTTT-CCCAAATTA
* *
18248 ATTTCTAATTAAATCGAAACAATATTCAGATGCTCGTAAAAACAAATTTTTA-ATTCCAATGTGT
62 ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATA-TCCAATGTGT
** ** * * ** *
18312 CAAAGATTTAATTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCCAAAAATCATTTAAAACT
126 -TGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAATT
* **
18377 GAGCCGGGATCCGAAACGCGTTTTTAGCCAAAAATCGTGACAGTTAGTACACGATTTCGG-----
190 GAGCCGGGATCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGTAAAA
* ** *** * *** * * *
18437 --CT-C-AAAACTGACGTGAAATTTTTTTTCTTC-ATTTTTTAATAAAATATTTAG-AAAAATAT
255 TTTTGCAAAAACTGAC-CCAAAAAGTTTTTCCTCAATTTTTTGCCAGAATACTCAGAAAAAATAT
* *
18496 AAAATTCAAT
319 ATAATTCAAC
* * * * *
18506 GCCAAAAAGACTGACGGACTTTTCACCCTTCTAATATCGTTTTTC-CATTTGTTT-CAAAAATAA
1 GCCAAAAA-ATTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCTC-TTT-TTTCCCAAATTAA
* * * * ** *
18569 TTTTTAATTAAATCAAAACAAGA-TCGAGGTGGTAATAAAAACAAA-TCTTTATATCCAATATGG
63 TTTCTAATTAAATCGAAACAAGATTC-AGATGCTCGTAAAAACAAATTC-TTATATCCAATGT-G
* * * * * * * *
18632 ATGACATTTGGTTCGATGAATATAAATATTTCAAGAAGTCTTTTTGTCAAAAATCCTGCAAATTT
125 TTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAATT
* *
18697 GAGCCGGCACTCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGATAA
190 GAGCCGGGA-TCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCGG-TAA
*
18762 AATTTTGCAAAAATTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCAGAATACTCAGAAAAAATA
253 AATTTTGCAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCAGAATACTCAGAAAAAATA
18827 TATAATTCAAC
318 TATAATTCAAC
* ** *
18838 ACCAACAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTTC-CTTTTTTCCCCAAAAATTT
1 GCCAA-AAAATTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCTCTTTTTT-CCC--AAATTA
* * *
18902 A-TTCGTAATTAAATCGAAACAACATTCAGATGCTCGTACAAACAAATTCTTAAATCCAATGTGA
62 ATTTC-TAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCAATGTG-
** * * * ** *
18966 TTGAGATTTAATTAGATGAATATAGATATTTCAAGGAATCTTTCTGCCAAAAATCATATAAAACT
125 TTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAATT
* * *
19031 GAGCTGGGATCCGAAACGCGTTTTTAGCCAAAAATCGTGATGCTTTA-TACACGATTTC------
190 GAGCCGGGATCCGGAACGCGTTTTTAGCCAAAAATCGTGATG-GTTAGTACACGATTTCGGTAAA
* * * * *
19089 A----GCTAAAAACTAACCCGAAAAGTCTTT-CTCAAATTTTTGCCA-AATACTCATAAAAAATA
254 ATTTTGC-AAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCAGAATACTCAGAAAAAATA
*
19148 TATAACTCAAC
318 TATAATTCAAC
* * * * * * ** *
19159 GCCAAATATATTGACGGGCTTTACGCGCTTCTAATATCGTTTTACAATTTTTTTCCAAATTAATT
1 GCCAAA-AAATTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCTCTTTTTTCCCAAATTAATT
* * * *
19224 TCTAATTAAATCGAAACAAGATTCGGATGCTCGTAAAAACAAATCCTTATATACAATGTGGCTGA
65 TCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCAATGT-GTTGA
* * * *
19289 GATTTGGTTCGATGAATATAGATATTTGAAGGAGTCATTACGCCTAAAATCATGCAAAATTGAGC
129 GATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAATTGAGC
*
19354 CGGGAGTCCGGAACGCGTTTTT-GCCTAAAAATCGTG-TAGTTAGTACACGATTTCGGCTAAAAT
194 CGGGA-TCCGGAACGCGTTTTTAGCC-AAAAATCGTGATGGTTAGTACACGATTTCGG-TAAAAT
* * * * * *
19417 TTTGCAAAAACTGACTC-GAAATTCTTTTCCTCAATTTTTTGCCATAATAGTTAG--AAAA-A-A
256 TTTGCAAAAACTGACCCAAAAAGT-TTTTCCTCAATTTTTTGCCAGAATACTCAGAAAAAATATA
19477 T-ATT----
320 TAATTCAAC
* * *
19481 G---------T--AGG-GTTTTCACGTTTCTAATATCG-TTTT-T-TTTTTT-CCAAATTTATTT
1 GCCAAAAAATTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCTCTTTTTTCCCAAATTAATTT
* * * * *
19530 CTAATTAAATCGAAACAAAGATTGAGATGCTCATAAAAA-AAATTCTTA-ATTCAATTGTGACTA
66 CTAATTAAATCGAAAC-AAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCAA-TGTG-TTG
** * * * ** *
19593 AGATTTTTTTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCAAAAAATCAT-TTAAACTGA
128 AGA-TTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAATTGA
* * * **
19657 GCCGGGATCCGAAATGCGTTTTTTGCCAAAAATCGTGACAGTTAGTACACGATTTCGG-------
192 GCCGGGATCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGTAAAATT
* * * * * *** * * * *
19715 CT--AAAAACTGACGCGAAAATTTTTTTCTCAATTTTTTAATAAAATATTTAG-AAAAATATAAA
257 TTGCAAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCAGAATACTCAGAAAAAATATATA
*
19777 ATTCAAT
322 ATTCAAC
** ** * **
19784 GCCAAAAAGACGGACCGACTTTTCACCCTTCTAATATCGTTTTTC-CATTTGTTTCAGAAA-TAA
1 GCCAAAAA-ATTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCTC-TTT-TTTCCCAAATTAA
* * * * *
19847 TTTTTAATTAAATCAAAACAAGA-TC-GA-GGTGGTAATAAAACAAATCCTTATATCCAATGTGG
63 TTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT-A-AAAACAAATTCTTATATCCAATGT-G
*
19909 TTGACA--T--TT-GATGAATATAGATATTTCAAGGAGTCTTT
125 TTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTT
Statistics
Matches: 1408, Mismatches: 251, Indels: 227
0.75 0.13 0.12
Matches are distributed among these distances:
295 35 0.02
296 9 0.01
297 2 0.00
298 1 0.00
299 3 0.00
303 1 0.00
304 30 0.02
305 78 0.06
306 67 0.05
308 3 0.00
309 17 0.01
310 2 0.00
312 1 0.00
313 29 0.02
314 2 0.00
315 1 0.00
316 22 0.02
317 7 0.00
318 8 0.01
319 156 0.11
320 165 0.12
321 124 0.09
322 76 0.05
323 45 0.03
324 11 0.01
325 1 0.00
326 4 0.00
327 2 0.00
328 5 0.00
329 18 0.01
330 31 0.02
331 33 0.02
332 89 0.06
333 97 0.07
334 227 0.16
335 6 0.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (328 bp):
GCCAAAAAATTGAAGGACTTTTCACGCTTCTAATATCGTTTTTCTCTTTTTTCCCAAATTAATTT
CTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATATCCAATGTGTTGAGA
TTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAATTGAGCCG
GGATCCGGAACGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGTAAAATTTTGC
AAAAACTGACCCAAAAAGTTTTTCCTCAATTTTTTGCCAGAATACTCAGAAAAAATATATAATTC
AAC
Done.