genome.fa.s15852.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015852.1 Corchorus olitorius cultivar O-4 contig15885, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85233

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2419	322	7.5	321	77	7	1957	35	16	14	33	1.89
1--2101	652	3.2	647	86	4	2648	35	16	14	33	1.89
2446--10364	651	12.1	651	80	8	7743	35	16	14	33	1.89
10211--10532	175	1.8	175	80	6	391	38	15	10	36	1.82
11316--11365	25	2.0	24	84	3	64	62	6	10	22	1.48
16743--16793	24	2.1	24	100	0	102	39	0	3	56	1.18
26280--26321	22	1.9	22	90	0	66	45	9	0	45	1.36
27820--28279	89	5.2	89	95	1	823	35	12	12	39	1.81
28931--29043	2	58.5	2	71	13	58	47	5	0	46	1.31
28973--29043	19	3.9	19	75	15	62	53	4	0	42	1.20
33991--34024	15	2.3	15	89	0	50	17	35	0	47	1.48
34398--34427	13	2.2	14	94	5	53	83	0	13	3	0.77
40437--40480	23	1.9	24	86	9	65	61	11	11	15	1.57
44411--44442	12	2.6	13	90	9	50	62	31	6	0	1.20
44390--44439	18	2.8	18	78	0	55	56	30	10	4	1.51
45917--45941	6	4.2	6	100	0	50	68	16	16	0	1.22
46175--46206	1	32.0	1	100	0	64	0	0	0	100	0.00
49769--49800	16	2.0	16	93	0	55	78	0	15	6	0.95
63901--63989	44	2.0	44	100	0	178	38	15	23	22	1.93
63968--64005	19	2.0	19	100	0	76	52	15	10	21	1.72
64243--64271	14	2.1	14	100	0	58	10	20	20	48	1.79
68064--68101	17	2.2	18	85	4	51	47	21	18	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81364--81451	24	3.7	23	71	18	74	67	2	5	25	1.25
83608--83683	31	2.5	30	85	6	91	34	15	3	46	1.65

Tables:   1

The End!