Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015858.1 Corchorus olitorius cultivar O-4 contig15891, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60986

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2361--2385
12
2.1
12
100
0
50
40
0
28
32
1.57
2556--2599
22
2.0
22
81
0
52
13
54
0
31
1.39
3779--3985
57
3.7
55
83
3
234
26
12
18
42
1.85
4042--4090
21
2.3
21
78
0
53
26
10
24
38
1.87
4063--4211
57
2.6
56
82
4
174
25
12
18
43
1.85
5396--5509
57
2.0
55
89
3
174
31
23
3
41
1.71
5575--5655
42
1.9
42
97
0
153
29
7
16
46
1.73
8944--8985
18
2.3
18
87
4
57
30
14
14
40
1.85
9136--9171
9
4.0
9
100
0
72
22
0
33
44
1.53
18276--18348
36
2.0
36
100
0
146
39
21
10
27
1.87
26982--27092
30
3.7
31
78
7
95
22
9
25
42
1.84
31716--31744
13
2.1
14
93
6
51
20
20
10
48
1.79
35901--36113
111
1.9
111
93
1
365
27
26
13
32
1.94
36722--36791
35
2.1
34
91
5
115
28
10
17
44
1.81
37313--37426
37
3.1
37
98
0
219
53
18
1
26
1.54
37910--38121
106
2.0
106
96
0
388
37
19
22
21
1.95
40583--40645
31
2.0
31
93
0
108
26
9
20
42
1.83
40857--40964
27
4.0
27
92
0
171
17
20
26
35
1.95
45958--46006
21
2.3
21
89
0
71
10
20
48
20
1.78
51221--51442
113
2.0
113
97
0
417
36
17
21
25
1.95

Tables:   1

The End!