Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015859.1 Corchorus olitorius cultivar O-4 contig15892, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14469

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6017--6065
22
2.3
20
80
16
55
71
0
16
12
1.14
6022--6065
22
2.0
22
87
12
65
72
0
15
11
1.11
6430--6502
23
3.3
23
83
9
80
72
12
1
13
1.19
6430--6476
24
2.0
23
87
4
67
74
8
2
14
1.15
6482--6519
6
6.5
6
88
11
53
68
15
0
15
1.22
6449--6519
22
3.2
22
86
6
90
73
14
0
12
1.11
7107--7255
50
3.0
50
87
0
208
32
15
13
38
1.86
7858--7984
50
2.5
50
97
0
236
31
28
11
28
1.92
7943--8025
40
2.0
41
88
2
123
32
26
9
31
1.88
8047--8774
35
21.1
34
79
8
708
30
20
21
27
1.98
8047--8628
105
5.6
104
86
4
784
31
19
21
28
1.97
8613--8770
69
2.3
69
98
0
307
28
22
24
24
1.99
9003--9079
28
2.8
28
88
2
111
19
14
25
40
1.89
9289--9333
21
2.1
21
95
0
81
33
17
8
40
1.81
9310--9424
60
1.9
58
94
3
203
32
12
13
42
1.80
11707--11746
15
2.6
15
88
4
53
15
10
12
62
1.54
13989--14019
16
1.9
16
100
0
62
12
6
25
54
1.62

Tables:   1

The End!