genome.fa.s15860.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015860.1 Corchorus olitorius cultivar O-4 contig15893, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66304

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372--396	11	2.3	11	100	0	50	8	16	8	68	1.38
1151--1190	15	2.6	16	92	4	64	17	7	10	65	1.46
3138--3225	41	2.1	41	80	0	104	26	10	10	53	1.66
13502--13619	56	2.1	56	96	0	218	33	24	13	28	1.93
13627--13717	26	3.6	27	82	13	111	45	27	12	15	1.81
19073--19252	63	2.9	63	92	0	315	12	18	13	55	1.70
19390--19689	161	1.9	163	87	2	453	32	20	17	30	1.95
25990--26024	17	2.1	17	94	0	61	54	17	8	20	1.68
29758--29861	27	3.9	27	91	2	165	17	44	18	20	1.87
32642--32676	17	2.1	17	94	0	61	20	8	17	54	1.68
34177--34350	32	5.5	32	89	7	259	32	24	17	24	1.97
34172--34350	61	2.9	61	87	8	254	34	24	17	24	1.96
34172--34367	63	3.1	61	86	5	223	36	22	16	24	1.94
39129--39163	18	2.0	18	88	5	54	37	11	5	45	1.64
48031--48109	36	2.2	37	86	2	106	22	11	13	51	1.73
49257--49299	19	2.3	19	80	11	54	69	9	11	9	1.36
49893--49986	45	2.2	44	86	7	131	36	21	7	35	1.81
51751--51796	22	2.0	23	84	12	60	58	10	2	28	1.43
52778--52802	2	12.5	2	100	0	50	52	0	0	48	1.00
59449--59658	34	5.8	36	73	11	144	37	20	15	27	1.92
63350--63398	8	6.0	8	78	4	53	46	6	20	26	1.73
63472--63632	36	4.5	36	68	7	112	34	29	18	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63392--64198	35	22.9	35	76	7	605	37	24	20	17	1.94
63392--64189	107	7.5	107	76	9	469	37	24	20	17	1.94
63638--64198	208	2.7	211	83	5	685	37	23	21	17	1.93
63604--64232	71	9.0	69	77	8	488	37	23	21	17	1.94
65879--65911	14	2.4	14	90	5	50	30	9	15	45	1.77
66271--66303	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1

The End!