genome.fa.s15867.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015867.1 Corchorus olitorius cultivar O-4 contig15900, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79332

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624--719	27	3.5	26	78	14	95	41	22	16	18	1.90
655--719	28	2.4	28	89	2	96	44	26	13	15	1.84
1007--1171	90	1.8	90	92	0	276	27	26	17	28	1.98
1178--1410	35	6.7	35	89	0	367	29	24	18	27	1.98
1178--1410	70	3.3	70	95	0	412	29	24	18	27	1.98
1473--1527	25	2.2	25	77	6	58	34	7	25	32	1.83
4407--4453	11	4.7	10	80	17	53	40	6	21	31	1.78
4418--4453	19	1.9	18	88	5	54	41	2	22	33	1.68
16410--16457	21	2.3	21	85	0	69	10	2	45	41	1.50
18484--18577	27	3.4	27	85	2	125	40	22	17	20	1.91
18508--18577	28	2.6	27	90	4	113	41	25	15	17	1.89
21302--21336	10	3.5	10	100	0	70	8	40	0	51	1.33
21447--21476	5	6.0	5	92	0	51	0	43	0	56	0.99
24586--24723	66	2.1	66	82	2	161	35	8	16	39	1.80
25728--25754	14	1.9	14	100	0	54	37	22	0	40	1.54
26594--26625	2	16.0	2	100	0	64	50	0	0	50	1.00
27609--27643	2	17.5	2	100	0	70	48	0	0	51	1.00
32566--32590	2	12.5	2	100	0	50	48	0	0	52	1.00
33184--33277	45	2.2	43	86	7	129	40	21	4	34	1.73
35415--35508	46	2.0	46	91	4	154	46	9	23	20	1.79
41505--41559	18	3.1	18	72	17	60	16	7	21	54	1.66
44710--44755	24	2.0	24	86	4	67	10	21	17	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47077--47106	15	2.1	15	93	6	53	66	6	13	13	1.43
47648--47732	30	2.9	30	80	1	91	38	24	8	28	1.84
48334--48407	31	2.4	31	90	0	112	36	6	25	31	1.82
48730--48764	13	2.6	14	86	4	54	31	0	20	48	1.50
50486--50551	32	2.1	32	82	5	80	28	13	28	28	1.94
75295--75384	45	2.1	44	89	6	139	38	20	5	35	1.76
76988--77036	2	26.5	2	84	15	70	48	0	0	51	1.00
76977--77028	16	3.2	15	86	10	59	48	0	1	50	1.12
77478--77518	22	1.9	21	90	5	64	58	0	0	41	0.98
77507--77536	7	4.3	7	91	0	51	73	0	0	26	0.84
77949--78021	27	2.7	27	84	12	98	17	15	26	41	1.89
78328--78367	19	2.1	19	90	0	62	15	20	30	35	1.93

Tables:   1

The End!