Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015868.1 Corchorus olitorius cultivar O-4 contig15901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38589

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8634--8701
25
2.7
25
97
0
127
10
48
16
25
1.77
8631--8720
25
3.6
25
89
7
114
10
45
15
28
1.78
12273--12346
22
3.4
22
76
10
62
39
13
10
36
1.80
17675--17799
22
5.8
22
72
18
93
35
13
10
40
1.79
17675--17751
21
3.6
21
76
11
75
37
14
9
38
1.78
17676--17783
43
2.5
43
81
4
119
34
15
9
40
1.79
17862--17918
22
2.8
21
84
12
66
42
5
12
40
1.65
17902--17961
22
2.8
23
76
20
67
38
5
8
48
1.55
18960--18997
19
2.0
19
100
0
76
10
10
31
47
1.72
18964--19006
19
2.3
19
91
0
68
11
16
32
39
1.84
18964--19012
19
2.6
19
87
3
55
14
14
30
40
1.85
22231--22260
15
2.0
15
100
0
60
53
6
6
33
1.53
24598--24630
9
3.6
9
95
4
57
51
0
0
48
1.00
25358--25404
22
2.1
22
96
0
85
14
19
17
48
1.81
26624--26802
88
2.1
86
93
3
306
32
24
7
35
1.83
29731--29807
15
5.4
14
68
21
52
58
5
15
20
1.56
29741--30082
21
16.3
21
72
16
237
51
4
21
21
1.66
29784--29960
62
2.8
62
95
0
309
50
3
23
22
1.66
29760--30082
62
5.1
63
81
7
302
51
4
22
21
1.67
30120--30224
35
3.1
34
84
10
153
55
2
14
27
1.53
30130--30255
35
3.8
33
80
13
127
54
4
15
25
1.60
30230--30310
27
3.1
26
78
18
89
56
2
20
19
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30372--30404
17
1.9
17
93
0
57
57
3
24
15
1.52
32176--32229
26
2.1
26
96
0
99
51
3
3
40
1.37
32351--32416
27
2.4
27
82
7
80
45
3
7
43
1.47
33530--33591
27
2.3
27
78
18
67
45
0
6
48
1.28
34009--34061
5
9.8
5
90
10
70
58
0
0
41
0.98
34009--34061
8
6.2
9
81
18
69
58
0
0
41
0.98
35646--35675
6
5.0
6
95
0
51
36
13
33
16
1.88

Tables:   1

The End!