Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015870.1 Corchorus olitorius cultivar O-4 contig15903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53021

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3234--3279
2
23.0
2
95
0
83
50
2
0
47
1.13
11720--11911
4
48.0
4
68
12
74
26
7
0
65
1.24
11766--11801
18
2.0
18
89
10
56
27
11
0
61
1.30
14897--14956
26
2.3
26
82
8
68
68
1
20
10
1.27
16280--16478
54
3.7
53
87
6
265
30
15
18
35
1.92
16468--16755
35
8.3
35
87
1
391
28
12
19
39
1.88
16468--16768
70
4.3
70
88
2
435
28
12
19
39
1.88
16747--16786
19
2.1
20
90
9
66
32
5
20
42
1.73
16544--16981
226
1.9
228
89
2
684
26
12
17
43
1.85
16767--17069
35
8.8
35
86
4
357
27
13
17
41
1.87
16767--17069
70
4.4
70
88
1
398
27
13
17
41
1.87
17035--17484
54
8.3
54
84
2
564
28
17
21
32
1.96
17460--17510
26
2.0
26
88
0
75
19
19
27
33
1.96
17513--17682
54
3.2
55
91
5
276
24
15
25
34
1.94
17513--17713
108
1.9
108
84
6
273
25
16
24
33
1.96
19120--19200
8
10.0
8
73
7
56
24
11
0
64
1.26
19145--19221
4
19.2
4
70
19
54
20
7
0
71
1.10
19121--19204
12
7.2
12
74
8
66
25
9
0
65
1.22
22174--22206
16
2.1
16
94
0
57
39
39
15
6
1.72
22241--22311
31
2.3
31
87
0
106
36
22
18
22
1.95
26266--26312
22
2.1
22
84
7
60
61
2
12
23
1.42
26189--26375
95
2.0
94
90
2
295
51
2
13
32
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26411--26472
31
2.0
31
93
0
106
43
6
20
29
1.77
29516--29591
28
2.8
26
75
11
71
28
23
10
36
1.88
31006--31051
2
23.0
2
91
8
76
50
2
0
47
1.13
52143--52289
79
1.9
79
91
2
242
53
2
8
35
1.44

Tables:   1

The End!