Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015872.1 Corchorus olitorius cultivar O-4 contig15905, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11756
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.25


Found at i:10940 original size:50 final size:50

Alignment explanation


    Indices: 10882--11101  Score: 404
    Period size: 50  Copynumber: 4.4  Consensus size: 50

      10872 ACCAGATATC

                                                              
      10882 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT
          1 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT

                                                              
      10932 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT
          1 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT

                                                              
      10982 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT
          1 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT

                                      *                       *
      11032 AAGATTGAATTGGAAGACAGTTCGAATGATAAGCGGAAGACGGTCCTTTCG
          1 AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTT-T

               *               
      11083 AAGTTTGAATTGGAAGACA
          1 AAGATTGAATTGGAAGACA

      11102 ATTTGAAGAA


Statistics
Matches: 166,  Mismatches: 3, Indels: 1
        0.98            0.02        0.01

Matches are distributed among these distances:
  50  148  0.89
  51   18  0.11

ACGTcount: A:0.35, C:0.12, G:0.30, T:0.24


Consensus pattern (50 bp):   
AAGATTGAATTGGAAGACAGTTCGAAGGATAAGCGGAAGACGGTCCTTTT

Done.