Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015875.1 Corchorus olitorius cultivar O-4 contig15908, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2415
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.38


Found at i:994 original size:36 final size:36

Alignment explanation


    Indices: 954--1023  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

        944 GAGATTTTGG

                         *      *               
        954 AGAAATATGATAATCAAAATTACAAAAAATGTAATA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAATA

                                    *  *      
        990 AGAAATATGATAACCAAAATCACAGAAGATGTAA
          1 AGAAATATGATAACCAAAATCACAAAAAATGTAA

       1024 GGTTATTGAA


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.59, C:0.09, G:0.11, T:0.21


Consensus pattern (36 bp):   
AGAAATATGATAACCAAAATCACAAAAAATGTAATA
Done.