Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015876.1 Corchorus olitorius cultivar O-4 contig15909, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8636
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28


Found at i:1561 original size:76 final size:76

Alignment explanation


    Indices: 1411--1554  Score: 193
    Period size: 76  Copynumber: 1.9  Consensus size: 76

       1401 ACAAGGACCC

                                                            *  *           * 
       1411 CGACTCCACCTGGGCGCCCACATGGTTGTCTTGAGCACCCATGTGTTTTGCTTGAGAACCCAGGT
          1 CGACTCCACCTGGGCGCCCACATGGTTGTCTTGAGCACCCATGTGTTTCGCCTGAGAACCCAGAT

                       
       1476 GGGCAGTGTCA
         66 GGGCAGTGTCA

                    *     *                                          **      
       1487 CGACTCCAGCTGGGTGCCCACATGGTTTGTC-TGAAG-ACCCATGTGTTTCGCCTGATCACCCAG
          1 CGACTCCACCTGGGCGCCCACATGG-TTGTCTTG-AGCACCCATGTGTTTCGCCTGAGAACCCAG

                 
       1550 ATGGG
         64 ATGGG

       1555 TTGTGTCTTA


Statistics
Matches: 59,  Mismatches: 7, Indels: 4
        0.84            0.10        0.06

Matches are distributed among these distances:
  76   52  0.88
  77    7  0.12

ACGTcount: A:0.17, C:0.29, G:0.28, T:0.25


Consensus pattern (76 bp):   
CGACTCCACCTGGGCGCCCACATGGTTGTCTTGAGCACCCATGTGTTTCGCCTGAGAACCCAGAT
GGGCAGTGTCA
Done.