Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015881.1 Corchorus olitorius cultivar O-4 contig15914, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7654
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:481 original size:15 final size:16

Alignment explanation


    Indices: 448--487  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        438 TTACTTTGCT

                            
        448 TTGTTTTCTAGTATAA
          1 TTGTTTTCTAGTATAA

                        *   
        464 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTATAA

               *     
        479 TTGCTTTCT
          1 TTGTTTTCT

        488 TTCAACCTCT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.15, C:0.10, G:0.12, T:0.62


Consensus pattern (16 bp):   
TTGTTTTCTAGTATAA

Found at i:6409 original size:15 final size:16

Alignment explanation


    Indices: 6376--6415  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       6366 TTACTTTGCT

                            
       6376 TTGTTTTCTAGTATAA
          1 TTGTTTTCTAGTATAA

                        *   
       6392 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTATAA

               *     
       6407 TTGCTTTCT
          1 TTGTTTTCT

       6416 TTCAACCTCT


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.15, C:0.10, G:0.12, T:0.62


Consensus pattern (16 bp):   
TTGTTTTCTAGTATAA
Done.