Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015884.1 Corchorus olitorius cultivar O-4 contig15917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70834

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4289--4338
21
2.4
21
93
0
82
18
44
22
16
1.87
8673--8714
15
2.7
15
92
3
66
14
7
14
64
1.48
8948--9011
24
2.7
24
80
0
83
23
45
12
18
1.84
10200--10430
127
1.8
127
81
5
288
15
15
17
51
1.76
12659--12688
15
2.0
15
93
0
51
43
0
43
13
1.43
12820--12880
31
2.0
31
96
0
113
40
9
8
40
1.68
15321--15356
18
2.0
18
100
0
72
27
11
5
55
1.57
18390--18475
27
3.2
27
71
3
75
38
26
15
19
1.91
19995--20028
14
2.4
14
90
9
52
52
0
2
44
1.16
21184--21247
22
2.9
22
83
4
67
29
15
6
48
1.70
21391--21596
22
9.5
22
74
17
132
34
17
9
38
1.82
21576--21617
22
2.0
20
82
13
50
33
14
9
42
1.78
21775--21941
22
7.6
22
76
7
108
35
14
9
40
1.78
21750--21943
44
4.4
44
76
8
173
35
14
9
41
1.78
21794--21922
66
2.0
66
85
0
177
34
15
10
39
1.81
21795--21941
22
6.7
22
77
5
120
35
14
9
40
1.79
22041--22102
22
2.8
22
90
0
97
45
14
6
33
1.71
22027--22188
22
7.4
22
73
8
91
37
19
8
34
1.81
22276--22426
22
6.9
21
72
12
90
37
18
9
33
1.84
22272--22424
44
3.5
42
74
13
114
36
18
9
34
1.84
22193--22428
66
3.5
66
79
6
226
37
19
8
34
1.83
22591--22629
20
2.0
20
85
10
53
64
2
5
28
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25321--25446
65
1.9
65
98
0
243
40
9
8
41
1.69
30583--30621
18
2.1
18
85
4
51
43
5
20
30
1.73
40068--40114
24
2.0
24
83
8
60
12
12
4
70
1.31
40835--40869
17
2.0
18
88
5
54
42
5
11
40
1.65
56098--56391
142
2.1
142
94
1
516
30
18
18
32
1.95
60584--60609
13
2.0
13
100
0
52
53
30
0
15
1.42
61221--61251
11
2.8
11
95
0
53
29
6
32
32
1.83
68846--68908
25
2.6
24
85
9
83
46
9
7
36
1.66

Tables:   1

The End!