Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015888.1 Corchorus olitorius cultivar O-4 contig15921, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3981
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.35


Found at i:2004 original size:17 final size:17

Alignment explanation


    Indices: 1963--2006  Score: 52
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       1953 TTTTGAGGAG

                     *        
       1963 CTAATAAGGGAATGGGCT
          1 CTAA-AAGGAAATGGGCT

            *                
       1981 TTAAAAGGAAATGGGCT
          1 CTAAAAGGAAATGGGCT

              *      
       1998 CTGAAAGGA
          1 CTAAAAGGA

       2007 TTAAAGCTTT


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  17   19  0.86
  18    3  0.14

ACGTcount: A:0.39, C:0.09, G:0.32, T:0.20


Consensus pattern (17 bp):   
CTAAAAGGAAATGGGCT
Done.