Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015893.1 Corchorus olitorius cultivar O-4 contig15926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35185

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2198--2334
27
4.9
27
71
11
105
19
29
27
23
1.98
2808--3030
37
6.0
37
83
4
270
27
17
36
17
1.93
2933--3028
18
5.1
20
68
14
87
23
18
40
16
1.91
2926--3019
19
5.1
19
70
14
79
24
17
41
17
1.89
5570--5617
6
8.2
6
84
13
64
18
29
33
18
1.95
5570--5617
17
2.7
18
84
12
64
18
29
33
18
1.95
5573--5617
23
2.0
23
86
8
65
17
31
31
20
1.96
6013--6336
178
1.8
178
88
5
494
35
13
15
36
1.86
12785--12889
54
1.9
54
84
0
138
27
12
23
36
1.91
13759--13798
15
2.7
15
81
14
55
27
2
0
70
1.01
13759--13797
7
5.3
7
82
11
51
25
2
0
71
0.98
14212--14255
23
1.9
23
81
9
54
56
6
2
34
1.38
15996--16053
24
2.4
25
77
8
68
29
32
12
25
1.92
17285--17343
31
1.9
31
82
6
75
11
18
37
32
1.87
23842--23873
16
2.0
16
93
0
55
15
34
12
37
1.85
32402--32441
13
3.2
13
85
7
55
17
0
15
67
1.23
32502--32711
102
2.0
103
91
4
341
51
11
9
27
1.68
32764--32822
31
1.9
31
85
0
82
25
15
8
50
1.71

Tables:   1

The End!