Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015895.1 Corchorus olitorius cultivar O-4 contig15928, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180237

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
425--473
23
2.1
23
88
0
71
44
14
8
32
1.74
3248--3273
2
13.0
2
100
0
52
50
0
0
50
1.00
8436--8483
17
2.8
17
87
0
69
29
6
18
45
1.74
10496--10934
22
19.9
22
71
16
207
38
15
8
36
1.78
10484--10931
44
10.2
44
73
12
248
39
15
8
37
1.78
10672--10781
46
2.4
45
83
8
125
40
12
11
35
1.80
10768--10889
63
1.9
63
85
11
158
38
15
9
36
1.79
12210--12274
6
10.4
7
94
3
65
66
1
0
32
1.01
12219--12276
3
19.3
3
100
0
116
67
0
0
32
0.91
19602--19739
69
2.0
69
95
0
249
38
30
6
24
1.81
21658--21711
22
2.5
22
90
0
81
5
25
44
24
1.75
21675--21718
22
2.0
22
95
0
79
9
29
40
20
1.83
22024--22049
3
8.7
3
100
0
52
69
0
0
30
0.89
33824--33856
14
2.4
14
94
0
57
33
39
9
18
1.82
35519--35709
104
1.9
102
86
4
276
34
12
1
51
1.48
36601--36642
22
1.9
22
85
0
57
14
21
26
38
1.91
39703--39745
21
2.0
22
86
4
61
55
0
0
44
0.99
39918--40166
107
2.3
106
84
10
319
41
8
6
42
1.62
39918--40201
107
2.6
106
83
10
312
41
9
5
42
1.62
40240--40278
17
2.4
16
84
12
53
82
0
12
5
0.83
42198--42254
24
2.4
22
78
18
60
12
19
7
61
1.53
43969--44037
32
2.1
33
81
7
79
59
18
1
20
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44552--44612
30
2.0
31
96
3
115
32
6
6
54
1.52
45074--45120
14
3.2
14
72
21
51
21
8
8
61
1.51
50926--50993
35
1.9
36
90
3
111
13
13
13
60
1.60
50882--51098
113
1.9
112
80
7
251
10
18
14
55
1.67
66322--66555
124
1.9
123
84
4
312
34
13
20
32
1.91
66562--66727
86
1.9
86
88
0
251
27
21
7
43
1.80
73171--73291
62
2.0
62
85
6
165
29
13
25
31
1.93
94974--94999
2
13.0
2
100
0
52
50
0
0
50
1.00
99727--99768
16
2.8
14
86
13
57
66
14
7
11
1.43
107831--107857
9
3.0
9
100
0
54
77
11
0
11
0.99
108043--108083
21
2.0
21
85
9
57
34
9
26
29
1.88
109138--109218
33
2.5
33
82
8
85
25
6
22
45
1.75
109591--109648
29
2.0
30
93
3
100
29
18
31
20
1.97
109637--109666
15
2.0
15
93
0
51
33
6
36
23
1.81
111917--111953
12
3.1
12
88
0
56
24
48
18
8
1.75
112884--112952
33
2.1
33
94
0
120
50
4
27
17
1.64
113559--113631
27
2.7
25
80
14
74
54
0
4
41
1.19
114715--114778
33
1.9
33
93
0
110
14
18
17
50
1.79
116275--116308
17
2.0
17
100
0
68
35
11
17
35
1.87
117326--117832
52
10.1
52
79
12
533
28
18
14
39
1.90
117363--117746
96
4.0
96
93
1
644
28
19
14
38
1.91
119245--119295
13
3.9
13
76
7
50
58
1
1
37
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
122602--122639
18
2.1
19
85
5
51
63
7
0
28
1.23
126720--126751
16
1.9
17
93
6
57
62
9
9
18
1.52
128203--128264
30
2.0
31
84
9
83
33
17
8
40
1.79
142078--142102
11
2.3
11
100
0
50
48
16
8
28
1.74
143288--143328
19
2.2
19
86
8
57
17
17
17
48
1.81
149745--149783
2
19.5
2
100
0
78
48
0
0
51
1.00
168065--168092
2
14.0
2
100
0
56
50
0
0
50
1.00
168511--168590
40
2.0
40
92
4
135
40
6
18
35
1.76
175799--175832
15
2.3
15
95
5
61
35
5
11
47
1.65
178640--178679
4
10.0
4
88
0
53
42
0
7
50
1.30
178640--178679
6
6.7
6
88
0
53
42
0
7
50
1.30
178640--178679
10
4.0
10
90
0
53
42
0
7
50
1.30

Tables:   1

The End!