Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015897.1 Corchorus olitorius cultivar O-4 contig15930, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62900

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--66
17
2.6
18
80
12
53
50
6
2
41
1.39
708--1821
558
2.0
555
92
0
1870
30
19
14
35
1.92
3690--3741
25
2.1
25
92
0
86
26
5
9
57
1.53
4773--4807
2
17.5
2
100
0
70
48
0
0
51
1.00
9958--10010
25
2.0
27
82
7
65
60
1
1
35
1.19
11985--12023
21
1.9
20
84
5
51
53
0
2
43
1.14
12795--12851
25
2.3
26
82
14
75
57
0
1
40
1.09
12991--13026
16
2.1
18
90
10
58
41
0
0
58
0.98
14792--14911
48
2.4
49
83
9
145
21
20
35
23
1.96
14792--14911
24
4.8
25
78
8
129
21
20
35
23
1.96
19051--19197
48
3.1
48
81
0
168
27
18
30
23
1.98
19051--19189
24
5.8
24
76
0
134
25
17
31
25
1.97
22141--22172
17
1.9
17
93
6
57
56
6
9
28
1.55
26931--27055
22
5.7
22
74
9
105
36
8
12
43
1.73
26928--27055
44
2.9
43
83
2
148
35
8
12
42
1.73
27114--27145
2
16.5
2
93
6
57
46
0
0
53
1.00
27114--27143
15
2.0
15
100
0
60
46
0
0
53
1.00
27114--27147
17
2.0
17
100
0
68
47
0
0
52
1.00
38880--38925
23
2.0
23
91
0
74
36
19
23
19
1.95
51111--51173
21
3.0
21
83
0
81
57
7
22
12
1.61
52735--52770
19
1.9
18
88
5
54
33
22
2
41
1.68
58494--58548
27
2.0
28
86
10
78
52
3
30
12
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59838--59902
3
22.0
3
96
3
123
66
0
0
33
0.92
60058--60112
28
2.0
28
96
0
101
41
14
9
34
1.77
62860--62900
2
19.5
2
90
9
64
48
4
0
46
1.23

Tables:   1

The End!