Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015899.1 Corchorus olitorius cultivar O-4 contig15932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31652

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
491--595
31
3.4
32
76
15
107
40
20
14
24
1.90
1932--2036
31
3.5
30
73
12
90
23
16
20
39
1.92
2776--2837
27
2.3
27
84
15
76
50
0
3
46
1.17
7473--7530
26
2.2
27
93
3
100
48
3
3
44
1.36
8797--8904
47
2.3
48
88
4
157
52
7
12
26
1.66
9857--9902
13
3.3
13
82
11
56
17
10
28
43
1.82
10540--10639
31
3.3
30
80
10
114
44
9
9
38
1.68
11881--11906
3
8.7
3
100
0
52
0
30
0
69
0.89
16459--16499
2
20.5
2
100
0
82
48
0
0
51
1.00
23006--23045
19
2.2
18
86
4
53
30
20
5
45
1.72
25739--26236
270
1.8
271
92
1
847
30
19
22
26
1.98
30497--30789
48
6.1
48
86
6
362
41
22
23
12
1.87
30604--30822
48
4.8
42
74
18
131
41
22
22
12
1.88
30497--30789
96
3.0
96
87
3
412
41
22
23
12
1.87
30839--30962
43
2.9
43
86
0
176
28
16
31
23
1.96
30848--30997
43
3.5
43
84
0
122
31
18
29
20
1.97
31263--31489
69
3.3
68
89
2
332
26
24
28
20
1.99

Tables:   1

The End!