Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015900.1 Corchorus olitorius cultivar O-4 contig15933, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10811

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
218--279
22
2.8
22
95
4
108
17
30
24
27
1.97
258--418
69
2.3
70
90
1
252
26
23
29
20
1.99
1344--2599
43
28.6
43
82
8
1189
33
17
28
20
1.95
1344--2592
174
7.1
173
84
8
1322
33
17
28
20
1.95
3331--3373
20
2.2
20
87
8
61
34
18
0
46
1.50
3204--3725
50
10.4
50
79
5
419
35
18
5
41
1.73
3204--3684
151
3.2
149
77
7
434
35
17
5
41
1.73
3256--3809
50
11.1
49
75
9
325
35
18
5
40
1.72
6136--6187
24
2.2
24
82
3
61
55
19
11
13
1.68

Tables:   1

The End!