Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015902.1 Corchorus olitorius cultivar O-4 contig15935, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1971
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:1594 original size:21 final size:21

Alignment explanation


    Indices: 1555--1603  Score: 55
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1545 TCAATGCTTT

                         **       
       1555 AGGAATGCAAGAGGGATTTCAA
          1 AGGAA-GCAAGAGCCATTTCAA

                               * 
       1577 AGGAAGCAAGAGCCATTTCTA
          1 AGGAAGCAAGAGCCATTTCAA

                   
       1598 A-GAAGC
          1 AGGAAGC

       1604 TACAGTTCTC


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  20    5  0.21
  21   14  0.58
  22    5  0.21

ACGTcount: A:0.41, C:0.14, G:0.29, T:0.16


Consensus pattern (21 bp):   
AGGAAGCAAGAGCCATTTCAA
Done.